Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 HAL-202ENST00000538703 2637 ntTSL 2 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 AC006504.5-208ENST00000588784 2401 ntBASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 FES-203ENST00000394302 2133 ntTSL 5 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 MESTP3-201ENST00000503460 968 ntBASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 AC005252.2-201ENST00000624630 1141 ntBASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 FUK-202ENST00000378912 3925 ntTSL 2 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 AC016582.3-202ENST00000443870 6580 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC12.87□□□□□ -0.35
CCDC54Q8NEL0 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 AC245100.3-201ENST00000441281 285 ntBASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 FAM207CP-201ENST00000443486 507 ntBASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 MYCLP2-201ENST00000449268 967 ntBASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 HNRNPA1P13-201ENST00000510646 963 ntBASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 RFPL4AP1-201ENST00000530883 850 ntBASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 AC005498.2-205ENST00000593218 784 ntBASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 BX088702.1-201ENST00000610784 235 ntBASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC54Q8NEL0 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms