Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC005702.4-201ENST00000618393 416 ntBASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 SF1-209ENST00000433274 2317 ntTSL 2 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 SLC44A1-202ENST00000374723 9640 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 AC006504.5-208ENST00000588784 2401 ntBASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 SLC9A7P1-202ENST00000556476 2239 ntBASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 AC006033.1-201ENST00000440505 426 ntBASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 USP32P1-208ENST00000506594 1164 ntBASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 SPDYE18-201ENST00000510091 1050 ntBASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 C2orf69P2-201ENST00000562032 1123 ntBASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 AC128714.1-201ENST00000637035 887 ntBASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 AC136759.1-202ENST00000530858 2194 ntBASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 AC018529.2-202ENST00000611482 3087 ntBASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
PDLIM3Q53GG5 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 ARHGAP31-201ENST00000264245 9317 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 AC073957.3-201ENST00000609998 6758 ntBASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms