Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.22■□□□□ 0.03
COL4A4P53420 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.22■□□□□ 0.03
COL4A4P53420 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
COL4A4P53420 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL4A4P53420 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL4A4P53420 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL4A4P53420 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.22■□□□□ 0.03
COL4A4P53420 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL4A4P53420 PHB-210ENST00000511832 1509 ntTSL 2 BASIC15.22■□□□□ 0.03
COL4A4P53420 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
COL4A4P53420 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC15.22■□□□□ 0.03
COL4A4P53420 AC006529.1-201ENST00000459978 637 ntBASIC15.22■□□□□ 0.03
COL4A4P53420 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC15.22■□□□□ 0.03
COL4A4P53420 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC15.22■□□□□ 0.03
COL4A4P53420 NAV1-210ENST00000593583 726 ntBASIC15.22■□□□□ 0.03
COL4A4P53420 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL4A4P53420 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC15.22■□□□□ 0.03
COL4A4P53420 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL4A4P53420 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL4A4P53420 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
COL4A4P53420 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
COL4A4P53420 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL4A4P53420 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL4A4P53420 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL4A4P53420 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL4A4P53420 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC15.21■□□□□ 0.03
COL4A4P53420 HPD-204ENST00000543163 1709 ntTSL 5 BASIC15.21■□□□□ 0.03
COL4A4P53420 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC15.21■□□□□ 0.03
COL4A4P53420 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL4A4P53420 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL4A4P53420 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC15.21■□□□□ 0.03
COL4A4P53420 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.21■□□□□ 0.03
COL4A4P53420 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC15.21■□□□□ 0.03
COL4A4P53420 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL4A4P53420 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL4A4P53420 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL4A4P53420 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
COL4A4P53420 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL4A4P53420 GOLGA6L16P-201ENST00000441780 1299 ntBASIC15.21■□□□□ 0.03
COL4A4P53420 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC15.21■□□□□ 0.03
COL4A4P53420 RN7SL288P-201ENST00000490496 291 ntBASIC15.21■□□□□ 0.03
COL4A4P53420 KRT18P37-201ENST00000520711 1282 ntBASIC15.21■□□□□ 0.03
COL4A4P53420 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC15.21■□□□□ 0.03
COL4A4P53420 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL4A4P53420 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL4A4P53420 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC15.21■□□□□ 0.02
COL4A4P53420 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL4A4P53420 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
COL4A4P53420 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL4A4P53420 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
COL4A4P53420 AC106881.1-201ENST00000605849 3329 ntBASIC15.2■□□□□ 0.02
COL4A4P53420 GSN-209ENST00000449733 2702 ntTSL 2 BASIC15.2■□□□□ 0.02
COL4A4P53420 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC15.2■□□□□ 0.02
COL4A4P53420 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.2■□□□□ 0.02
COL4A4P53420 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL4A4P53420 AC005912.2-201ENST00000619492 2400 ntBASIC15.2■□□□□ 0.02
COL4A4P53420 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL4A4P53420 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC15.2■□□□□ 0.02
COL4A4P53420 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC15.2■□□□□ 0.02
COL4A4P53420 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL4A4P53420 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC15.2■□□□□ 0.02
COL4A4P53420 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
COL4A4P53420 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL4A4P53420 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.2■□□□□ 0.02
COL4A4P53420 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL4A4P53420 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.2■□□□□ 0.02
COL4A4P53420 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC15.2■□□□□ 0.02
COL4A4P53420 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC15.2■□□□□ 0.02
COL4A4P53420 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
COL4A4P53420 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC15.2■□□□□ 0.02
COL4A4P53420 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL4A4P53420 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC15.2■□□□□ 0.02
COL4A4P53420 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC15.2■□□□□ 0.02
COL4A4P53420 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
COL4A4P53420 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL4A4P53420 AL591471.1-201ENST00000621855 229 ntBASIC15.2■□□□□ 0.02
COL4A4P53420 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC15.2■□□□□ 0.02
COL4A4P53420 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC15.2■□□□□ 0.02
COL4A4P53420 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.2■□□□□ 0.02
COL4A4P53420 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL4A4P53420 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
COL4A4P53420 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.2■□□□□ 0.02
COL4A4P53420 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL4A4P53420 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC15.2■□□□□ 0.02
COL4A4P53420 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL4A4P53420 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL4A4P53420 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL4A4P53420 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL4A4P53420 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL4A4P53420 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
COL4A4P53420 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL4A4P53420 AC117503.4-201ENST00000623229 1418 ntBASIC15.19■□□□□ 0.02
COL4A4P53420 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL4A4P53420 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL4A4P53420 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
COL4A4P53420 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL4A4P53420 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL4A4P53420 AC092896.1-201ENST00000465850 380 ntBASIC15.19■□□□□ 0.02
COL4A4P53420 RN7SL147P-201ENST00000487345 298 ntBASIC15.19■□□□□ 0.02
COL4A4P53420 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms