Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
MRE11P49959 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
MRE11P49959 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC17.22■□□□□ 0.35
MRE11P49959 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC17.22■□□□□ 0.35
MRE11P49959 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC17.22■□□□□ 0.35
MRE11P49959 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.22■□□□□ 0.35
MRE11P49959 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.22■□□□□ 0.35
MRE11P49959 AP006294.1-201ENST00000415407 339 ntBASIC17.22■□□□□ 0.35
MRE11P49959 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC17.22■□□□□ 0.35
MRE11P49959 ACTBP11-201ENST00000436287 1126 ntBASIC17.22■□□□□ 0.35
MRE11P49959 SPDYE14P-201ENST00000442619 822 ntBASIC17.22■□□□□ 0.35
MRE11P49959 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.22■□□□□ 0.35
MRE11P49959 USB1-203ENST00000539737 1212 ntTSL 2 BASIC17.22■□□□□ 0.35
MRE11P49959 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 AC243562.1-201ENST00000560672 389 ntBASIC17.22■□□□□ 0.35
MRE11P49959 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.22■□□□□ 0.35
MRE11P49959 RN7SL219P-201ENST00000582872 296 ntBASIC17.22■□□□□ 0.35
MRE11P49959 MIR6080-201ENST00000617359 66 ntBASIC17.22■□□□□ 0.35
MRE11P49959 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC17.22■□□□□ 0.35
MRE11P49959 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC17.22■□□□□ 0.35
MRE11P49959 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC17.22■□□□□ 0.35
MRE11P49959 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
MRE11P49959 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC17.22■□□□□ 0.35
MRE11P49959 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
MRE11P49959 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC17.21■□□□□ 0.35
MRE11P49959 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
MRE11P49959 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC17.21■□□□□ 0.35
MRE11P49959 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.21■□□□□ 0.35
MRE11P49959 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.21■□□□□ 0.35
MRE11P49959 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.21■□□□□ 0.35
MRE11P49959 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.21■□□□□ 0.35
MRE11P49959 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC17.21■□□□□ 0.35
MRE11P49959 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC17.21■□□□□ 0.35
MRE11P49959 COG4-212ENST00000564653 590 ntTSL 5 BASIC17.21■□□□□ 0.35
MRE11P49959 AC103810.3-201ENST00000583567 96 ntBASIC17.21■□□□□ 0.35
MRE11P49959 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.21■□□□□ 0.35
MRE11P49959 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
MRE11P49959 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
MRE11P49959 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 DDC-213ENST00000617822 1809 ntTSL 3 BASIC17.21■□□□□ 0.35
MRE11P49959 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MRE11P49959 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.34
MRE11P49959 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
MRE11P49959 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC17.21■□□□□ 0.34
MRE11P49959 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
MRE11P49959 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
MRE11P49959 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MRE11P49959 AC072061.1-201ENST00000569710 2234 ntBASIC17.2■□□□□ 0.34
MRE11P49959 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.2■□□□□ 0.34
MRE11P49959 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
MRE11P49959 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MRE11P49959 AC007541.1-201ENST00000570282 1469 ntBASIC17.2■□□□□ 0.34
MRE11P49959 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MRE11P49959 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
MRE11P49959 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MRE11P49959 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
MRE11P49959 AC011495.1-201ENST00000498085 584 ntBASIC17.2■□□□□ 0.34
MRE11P49959 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
MRE11P49959 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.2■□□□□ 0.34
MRE11P49959 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MRE11P49959 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms