Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AP001267.2-201ENST00000532619 2086 ntBASIC13.69□□□□□ -0.22
COL5A1P20908 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
COL5A1P20908 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC13.69□□□□□ -0.22
COL5A1P20908 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
COL5A1P20908 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
COL5A1P20908 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC13.69□□□□□ -0.22
COL5A1P20908 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
COL5A1P20908 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
COL5A1P20908 LINC00554-201ENST00000564841 3011 ntBASIC13.69□□□□□ -0.22
COL5A1P20908 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
COL5A1P20908 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 OR51A9P-201ENST00000422578 911 ntBASIC13.69□□□□□ -0.22
COL5A1P20908 EEF1DP2-201ENST00000433698 843 ntBASIC13.69□□□□□ -0.22
COL5A1P20908 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC13.69□□□□□ -0.22
COL5A1P20908 APOC1-209ENST00000592885 562 ntTSL 3 BASIC13.69□□□□□ -0.22
COL5A1P20908 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC13.69□□□□□ -0.22
COL5A1P20908 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC13.69□□□□□ -0.22
COL5A1P20908 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC13.69□□□□□ -0.22
COL5A1P20908 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
COL5A1P20908 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
COL5A1P20908 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
COL5A1P20908 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
COL5A1P20908 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
COL5A1P20908 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.68□□□□□ -0.22
COL5A1P20908 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.68□□□□□ -0.22
COL5A1P20908 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
COL5A1P20908 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
COL5A1P20908 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC13.68□□□□□ -0.22
COL5A1P20908 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC13.68□□□□□ -0.22
COL5A1P20908 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
COL5A1P20908 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.68□□□□□ -0.22
COL5A1P20908 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 OR52M2P-201ENST00000414298 959 ntBASIC13.68□□□□□ -0.22
COL5A1P20908 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 PSAT1P2-201ENST00000426107 972 ntBASIC13.68□□□□□ -0.22
COL5A1P20908 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC13.68□□□□□ -0.22
COL5A1P20908 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC13.68□□□□□ -0.22
COL5A1P20908 TREHP1-201ENST00000531328 465 ntBASIC13.68□□□□□ -0.22
COL5A1P20908 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC13.68□□□□□ -0.22
COL5A1P20908 RN7SL455P-201ENST00000580629 282 ntBASIC13.68□□□□□ -0.22
COL5A1P20908 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC13.68□□□□□ -0.22
COL5A1P20908 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC13.68□□□□□ -0.22
COL5A1P20908 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
COL5A1P20908 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC13.68□□□□□ -0.22
COL5A1P20908 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.68□□□□□ -0.22
COL5A1P20908 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC13.68□□□□□ -0.22
COL5A1P20908 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
COL5A1P20908 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL5A1P20908 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC13.68□□□□□ -0.22
COL5A1P20908 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
COL5A1P20908 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL5A1P20908 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL5A1P20908 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL5A1P20908 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL5A1P20908 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC13.67□□□□□ -0.22
COL5A1P20908 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
COL5A1P20908 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL5A1P20908 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL5A1P20908 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL5A1P20908 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL5A1P20908 MIR566-201ENST00000385187 94 ntBASIC13.67□□□□□ -0.22
COL5A1P20908 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC13.67□□□□□ -0.22
COL5A1P20908 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC13.67□□□□□ -0.22
COL5A1P20908 KRT18P4-201ENST00000422599 1288 ntBASIC13.67□□□□□ -0.22
COL5A1P20908 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC13.67□□□□□ -0.22
COL5A1P20908 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL5A1P20908 ALG1L7P-201ENST00000502317 768 ntBASIC13.67□□□□□ -0.22
COL5A1P20908 SLC25A15P3-201ENST00000505530 290 ntBASIC13.67□□□□□ -0.22
COL5A1P20908 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC13.67□□□□□ -0.22
COL5A1P20908 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC13.67□□□□□ -0.22
COL5A1P20908 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms