Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 KRT8P43-201ENST00000406052 1458 ntBASIC6.32□□□□□ -1.4
USH2AO75445 LILRP1-201ENST00000444199 1370 ntBASIC6.32□□□□□ -1.4
USH2AO75445 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
USH2AO75445 BTF3-202ENST00000380591 1237 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
USH2AO75445 AC103724.2-201ENST00000520355 476 ntBASIC6.32□□□□□ -1.4
USH2AO75445 IMMP1L-215ENST00000534812 612 ntTSL 2 BASIC6.32□□□□□ -1.4
USH2AO75445 AC090907.2-201ENST00000559857 720 ntTSL 3 BASIC6.32□□□□□ -1.4
USH2AO75445 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
USH2AO75445 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC6.32□□□□□ -1.4
USH2AO75445 AL359091.4-201ENST00000610052 409 ntBASIC6.32□□□□□ -1.4
USH2AO75445 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
USH2AO75445 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
USH2AO75445 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 TMEM186-201ENST00000333050 1448 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC6.31□□□□□ -1.4
USH2AO75445 AC139712.1-201ENST00000378256 1875 ntBASIC6.31□□□□□ -1.4
USH2AO75445 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
USH2AO75445 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC6.31□□□□□ -1.4
USH2AO75445 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC6.31□□□□□ -1.4
USH2AO75445 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 RN7SKP212-201ENST00000410851 328 ntBASIC6.31□□□□□ -1.4
USH2AO75445 AC093300.1-201ENST00000510368 1201 ntBASIC6.31□□□□□ -1.4
USH2AO75445 MT1L-201ENST00000565768 411 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC6.31□□□□□ -1.4
USH2AO75445 AC148476.1-201ENST00000622182 705 ntBASIC6.31□□□□□ -1.4
USH2AO75445 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
USH2AO75445 WASH5P-206ENST00000632506 1147 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 PIGA-209ENST00000634582 965 ntTSL 2 BASIC6.31□□□□□ -1.4
USH2AO75445 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
USH2AO75445 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
USH2AO75445 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC6.31□□□□□ -1.4
USH2AO75445 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 PDXDC2P-206ENST00000534700 1315 ntBASIC6.31□□□□□ -1.4
USH2AO75445 AC124944.3-201ENST00000607976 1304 ntBASIC6.31□□□□□ -1.4
USH2AO75445 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC6.31□□□□□ -1.4
USH2AO75445 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC6.31□□□□□ -1.4
USH2AO75445 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC6.31□□□□□ -1.4
USH2AO75445 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC6.31□□□□□ -1.4
USH2AO75445 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC6.31□□□□□ -1.4
USH2AO75445 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC6.31□□□□□ -1.4
USH2AO75445 KRT18P33-201ENST00000398525 1043 ntBASIC6.31□□□□□ -1.4
USH2AO75445 POLR3DP1-201ENST00000398689 1176 ntBASIC6.31□□□□□ -1.4
USH2AO75445 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC6.31□□□□□ -1.4
USH2AO75445 HNRNPA1P73-201ENST00000446472 928 ntBASIC6.31□□□□□ -1.4
USH2AO75445 RNA5SP288-201ENST00000516075 93 ntBASIC6.31□□□□□ -1.4
USH2AO75445 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC6.31□□□□□ -1.4
USH2AO75445 PCTP-206ENST00000573500 919 ntTSL 3 BASIC6.31□□□□□ -1.4
USH2AO75445 CCND3P2-201ENST00000579393 537 ntBASIC6.31□□□□□ -1.4
USH2AO75445 RN7SL460P-201ENST00000582806 258 ntBASIC6.31□□□□□ -1.4
USH2AO75445 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC6.31□□□□□ -1.4
USH2AO75445 IL4R-219ENST00000628578 201 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 DUX4L33-201ENST00000635217 958 ntBASIC6.31□□□□□ -1.4
USH2AO75445 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC6.31□□□□□ -1.4
USH2AO75445 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC6.31□□□□□ -1.4
USH2AO75445 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC6.31□□□□□ -1.4
USH2AO75445 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC6.31□□□□□ -1.4
USH2AO75445 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC6.31□□□□□ -1.4
USH2AO75445 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC6.31□□□□□ -1.4
USH2AO75445 POLL-206ENST00000370172 2308 ntTSL 2 BASIC6.31□□□□□ -1.4
USH2AO75445 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
USH2AO75445 MIR632-201ENST00000385193 94 ntBASIC6.31□□□□□ -1.4
USH2AO75445 LINC00544-201ENST00000400540 1031 ntTSL 5 BASIC6.31□□□□□ -1.4
USH2AO75445 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC6.31□□□□□ -1.4
USH2AO75445 RPS15P5-201ENST00000449885 432 ntBASIC6.31□□□□□ -1.4
USH2AO75445 HNRNPA1P72-201ENST00000529511 967 ntBASIC6.31□□□□□ -1.4
USH2AO75445 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC6.31□□□□□ -1.4
USH2AO75445 AC090386.2-201ENST00000623010 1039 ntBASIC6.31□□□□□ -1.4
USH2AO75445 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC6.31□□□□□ -1.4
USH2AO75445 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC6.31□□□□□ -1.4
USH2AO75445 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC6.31□□□□□ -1.4
USH2AO75445 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
USH2AO75445 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC6.31□□□□□ -1.4
USH2AO75445 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
USH2AO75445 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms