Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
PDLIM1O00151 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 FOXN3-219ENST00000615335 2421 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
PDLIM1O00151 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
PDLIM1O00151 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.08□□□□□ -0.16
PDLIM1O00151 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.08□□□□□ -0.16
PDLIM1O00151 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.08□□□□□ -0.16
PDLIM1O00151 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.08□□□□□ -0.16
PDLIM1O00151 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.08□□□□□ -0.16
PDLIM1O00151 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 AC009407.1-201ENST00000568958 598 ntBASIC14.08□□□□□ -0.16
PDLIM1O00151 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.08□□□□□ -0.16
PDLIM1O00151 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.08□□□□□ -0.16
PDLIM1O00151 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.08□□□□□ -0.16
PDLIM1O00151 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 AC111170.3-201ENST00000624282 2464 ntBASIC14.08□□□□□ -0.16
PDLIM1O00151 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.08□□□□□ -0.16
PDLIM1O00151 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC14.08□□□□□ -0.16
PDLIM1O00151 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.08□□□□□ -0.16
PDLIM1O00151 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
PDLIM1O00151 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.08□□□□□ -0.16
PDLIM1O00151 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC14.08□□□□□ -0.16
PDLIM1O00151 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 TSN-212ENST00000536142 3328 ntTSL 2 BASIC14.08□□□□□ -0.16
PDLIM1O00151 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
PDLIM1O00151 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
PDLIM1O00151 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC14.08□□□□□ -0.16
PDLIM1O00151 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC14.07□□□□□ -0.16
PDLIM1O00151 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC14.07□□□□□ -0.16
PDLIM1O00151 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
PDLIM1O00151 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC14.07□□□□□ -0.16
PDLIM1O00151 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
PDLIM1O00151 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
PDLIM1O00151 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 HRC-201ENST00000252825 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.07□□□□□ -0.16
PDLIM1O00151 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.07□□□□□ -0.16
PDLIM1O00151 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.07□□□□□ -0.16
PDLIM1O00151 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.07□□□□□ -0.16
PDLIM1O00151 RN7SL618P-201ENST00000477850 296 ntBASIC14.07□□□□□ -0.16
PDLIM1O00151 INGX-202ENST00000489074 768 ntBASIC14.07□□□□□ -0.16
PDLIM1O00151 SLED1-202ENST00000512051 380 ntBASIC14.07□□□□□ -0.16
PDLIM1O00151 MIR497HG-202ENST00000572453 3838 ntBASIC14.07□□□□□ -0.16
PDLIM1O00151 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.07□□□□□ -0.16
PDLIM1O00151 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.07□□□□□ -0.16
PDLIM1O00151 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.07□□□□□ -0.16
PDLIM1O00151 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC14.07□□□□□ -0.16
PDLIM1O00151 AC022144.1-201ENST00000602255 1580 ntBASIC14.07□□□□□ -0.16
PDLIM1O00151 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 AC004899.2-201ENST00000622993 3860 ntBASIC14.07□□□□□ -0.16
PDLIM1O00151 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
PDLIM1O00151 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.07□□□□□ -0.16
PDLIM1O00151 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
PDLIM1O00151 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC14.07□□□□□ -0.16
PDLIM1O00151 AC004834.1-202ENST00000638785 1737 ntTSL 5 BASIC14.07□□□□□ -0.16
PDLIM1O00151 CDHR5-202ENST00000358353 3635 ntAPPRIS P4 TSL 5 BASIC14.07□□□□□ -0.16
PDLIM1O00151 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM1O00151 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.07□□□□□ -0.16
PDLIM1O00151 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.07□□□□□ -0.16
PDLIM1O00151 EML1-203ENST00000334192 4064 ntTSL 5 BASIC14.06□□□□□ -0.16
PDLIM1O00151 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
PDLIM1O00151 MEP1A-201ENST00000230588 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM1O00151 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC14.06□□□□□ -0.16
PDLIM1O00151 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC14.06□□□□□ -0.16
PDLIM1O00151 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM1O00151 SFTPA1-202ENST00000419470 2210 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM1O00151 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
PDLIM1O00151 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
PDLIM1O00151 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms