Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 MIR4783-201ENST00000580343 82 ntBASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 AC009955.4-201ENST00000597192 544 ntBASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 KC6-205ENST00000599934 556 ntTSL 4 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 AC027601.5-201ENST00000624065 2482 ntBASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 AC015688.4-201ENST00000580780 1647 ntBASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 TKT-201ENST00000296289 1931 ntTSL 5 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 HSPA7-201ENST00000445535 1927 ntBASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A3BPQ9Y5P4 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 GRK6P1-201ENST00000400595 1711 ntBASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 E2F3P2-201ENST00000447755 1422 ntBASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 AC021723.1-201ENST00000486306 515 ntBASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 AC091804.1-201ENST00000486888 567 ntBASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 AC103988.2-201ENST00000561804 725 ntBASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 NKG7-204ENST00000595217 816 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 F10-203ENST00000409306 1450 ntTSL 3 BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 AL133338.1-201ENST00000565695 1517 ntBASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 AC117489.1-201ENST00000625169 3217 ntBASIC16.4■□□□□ 0.22
COL4A3BPQ9Y5P4 AC139712.1-201ENST00000378256 1875 ntBASIC16.39■□□□□ 0.22
COL4A3BPQ9Y5P4 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.22
COL4A3BPQ9Y5P4 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
COL4A3BPQ9Y5P4 KRT8P29-201ENST00000420409 1371 ntBASIC16.39■□□□□ 0.21
COL4A3BPQ9Y5P4 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A3BPQ9Y5P4 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A3BPQ9Y5P4 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A3BPQ9Y5P4 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC16.39■□□□□ 0.21
COL4A3BPQ9Y5P4 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A3BPQ9Y5P4 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
COL4A3BPQ9Y5P4 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC16.39■□□□□ 0.21
COL4A3BPQ9Y5P4 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A3BPQ9Y5P4 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A3BPQ9Y5P4 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A3BPQ9Y5P4 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
COL4A3BPQ9Y5P4 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms