Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
VPS4AQ9UN37 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.33□□□□□ -0.11
VPS4AQ9UN37 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
VPS4AQ9UN37 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.33□□□□□ -0.11
VPS4AQ9UN37 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 BAATP1-201ENST00000412284 1225 ntBASIC14.33□□□□□ -0.12
VPS4AQ9UN37 CALR4P-201ENST00000431943 946 ntBASIC14.33□□□□□ -0.12
VPS4AQ9UN37 C2orf27AP3-201ENST00000434123 579 ntBASIC14.33□□□□□ -0.12
VPS4AQ9UN37 IGHJ2P-201ENST00000454480 60 ntBASIC14.33□□□□□ -0.12
VPS4AQ9UN37 RNA5SP423-201ENST00000517127 109 ntBASIC14.33□□□□□ -0.12
VPS4AQ9UN37 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 AL354718.3-201ENST00000616414 581 ntBASIC14.33□□□□□ -0.12
VPS4AQ9UN37 CR382287.1-201ENST00000623954 586 ntBASIC14.33□□□□□ -0.12
VPS4AQ9UN37 AC244452.3-201ENST00000636814 210 ntBASIC14.33□□□□□ -0.12
VPS4AQ9UN37 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS4AQ9UN37 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 AL645937.2-201ENST00000396808 931 ntBASIC14.32□□□□□ -0.12
VPS4AQ9UN37 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 AC023310.1-201ENST00000554836 735 ntBASIC14.32□□□□□ -0.12
VPS4AQ9UN37 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 C2orf69P2-201ENST00000562032 1123 ntBASIC14.32□□□□□ -0.12
VPS4AQ9UN37 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 BRI3BPP1-201ENST00000594224 787 ntBASIC14.32□□□□□ -0.12
VPS4AQ9UN37 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 AL391069.4-201ENST00000609583 481 ntBASIC14.32□□□□□ -0.12
VPS4AQ9UN37 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 AL158070.2-201ENST00000623713 1621 ntBASIC14.32□□□□□ -0.12
VPS4AQ9UN37 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 AC134312.5-201ENST00000568031 1313 ntBASIC14.32□□□□□ -0.12
VPS4AQ9UN37 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 INTS4P2-202ENST00000614726 2019 ntBASIC14.32□□□□□ -0.12
VPS4AQ9UN37 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms