Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 MSRA-203ENST00000441698 788 ntTSL 2 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 CCNC-217ENST00000523985 958 ntTSL 2 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 AL157813.1-201ENST00000612996 587 ntBASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 AC018529.2-202ENST00000611482 3087 ntBASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 KRT18P36-201ENST00000411618 1276 ntBASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 ISCA2P1-201ENST00000425548 448 ntBASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 XBP1P1-201ENST00000436573 652 ntBASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 AL133466.1-201ENST00000447582 150 ntBASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 AC245884.6-201ENST00000515672 1067 ntBASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 IGHVIII-5-2-201ENST00000522505 261 ntBASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 AC090857.1-201ENST00000527400 390 ntBASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 RHOQP1-201ENST00000555758 579 ntBASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 RN7SL574P-201ENST00000581512 297 ntBASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 AC097724.1-201ENST00000609581 426 ntBASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLCF1Q9UBD9 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 AC006504.5-208ENST00000588784 2401 ntBASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms