Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC14.49□□□□□ -0.09
MKS1Q9NXB0 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
MKS1Q9NXB0 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
MKS1Q9NXB0 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
MKS1Q9NXB0 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
MKS1Q9NXB0 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
MKS1Q9NXB0 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
MKS1Q9NXB0 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
MKS1Q9NXB0 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MKS1Q9NXB0 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC14.49□□□□□ -0.09
MKS1Q9NXB0 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MKS1Q9NXB0 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MKS1Q9NXB0 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MKS1Q9NXB0 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
MKS1Q9NXB0 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 AC009474.1-201ENST00000455096 1565 ntBASIC14.48□□□□□ -0.09
MKS1Q9NXB0 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 AK2P2-201ENST00000439142 405 ntBASIC14.48□□□□□ -0.09
MKS1Q9NXB0 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 FTLP10-202ENST00000505798 471 ntBASIC14.48□□□□□ -0.09
MKS1Q9NXB0 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 CLUHP6-201ENST00000580789 941 ntBASIC14.48□□□□□ -0.09
MKS1Q9NXB0 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 AL139385.1-201ENST00000611744 3272 ntBASIC14.48□□□□□ -0.09
MKS1Q9NXB0 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
MKS1Q9NXB0 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 RN7SKP175-201ENST00000408472 289 ntBASIC14.47□□□□□ -0.09
MKS1Q9NXB0 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.47□□□□□ -0.09
MKS1Q9NXB0 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 AC133539.2-201ENST00000604757 467 ntBASIC14.47□□□□□ -0.09
MKS1Q9NXB0 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MKS1Q9NXB0 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms