Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 ACTBP14-201ENST00000411655 1089 ntBASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 GALP-202ENST00000440823 889 ntTSL 5 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 MT3-202ENST00000561640 514 ntTSL 3 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 MIR4746-201ENST00000579802 71 ntBASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 URAHP-205ENST00000610227 398 ntBASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 AC007952.5-201ENST00000572818 1486 ntBASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 AL022313.4-201ENST00000562756 2046 ntBASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 AC010900.1-201ENST00000449849 1296 ntBASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 GULOP-201ENST00000454030 748 ntBASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 AC132825.4-202ENST00000578792 434 ntBASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHANK3Q9BYB0 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 CICP14-201ENST00000629111 2732 ntBASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHANK3Q9BYB0 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 RPL14-203ENST00000416518 812 ntTSL 3 BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 ASS1P2-201ENST00000439895 1223 ntBASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 GOLGA2P8-201ENST00000505201 779 ntBASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 AC100858.1-201ENST00000514059 1228 ntBASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 EMC4-208ENST00000559078 599 ntTSL 3 BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms