Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VMP1Q96GC9 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VMP1Q96GC9 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
VMP1Q96GC9 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VMP1Q96GC9 MIR193BHG-211ENST00000641433 5365 ntBASIC14.18□□□□□ -0.14
VMP1Q96GC9 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VMP1Q96GC9 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VMP1Q96GC9 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VMP1Q96GC9 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VMP1Q96GC9 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
VMP1Q96GC9 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.18□□□□□ -0.14
VMP1Q96GC9 GUK1-206ENST00000366723 845 ntTSL 5 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VMP1Q96GC9 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 MIR1909-201ENST00000411312 80 ntBASIC14.18□□□□□ -0.14
VMP1Q96GC9 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 AC244107.1-201ENST00000442033 332 ntBASIC14.18□□□□□ -0.14
VMP1Q96GC9 KLF2P4-201ENST00000451959 1225 ntBASIC14.18□□□□□ -0.14
VMP1Q96GC9 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VMP1Q96GC9 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VMP1Q96GC9 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 AP005482.1-201ENST00000563722 1273 ntBASIC14.18□□□□□ -0.14
VMP1Q96GC9 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 AC025279.2-201ENST00000569730 653 ntBASIC14.18□□□□□ -0.14
VMP1Q96GC9 GNRHR2-203ENST00000581100 1187 ntBASIC14.18□□□□□ -0.14
VMP1Q96GC9 AL603764.1-201ENST00000636452 321 ntBASIC14.18□□□□□ -0.14
VMP1Q96GC9 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
VMP1Q96GC9 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VMP1Q96GC9 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VMP1Q96GC9 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VMP1Q96GC9 SLC6A6P1-201ENST00000413933 1850 ntBASIC14.18□□□□□ -0.14
VMP1Q96GC9 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 AC089987.1-201ENST00000551654 2209 ntBASIC14.18□□□□□ -0.14
VMP1Q96GC9 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VMP1Q96GC9 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VMP1Q96GC9 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
VMP1Q96GC9 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC14.17□□□□□ -0.14
VMP1Q96GC9 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
VMP1Q96GC9 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.17□□□□□ -0.14
VMP1Q96GC9 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
VMP1Q96GC9 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.17□□□□□ -0.14
VMP1Q96GC9 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.17□□□□□ -0.14
VMP1Q96GC9 AC022210.1-201ENST00000449856 793 ntBASIC14.17□□□□□ -0.14
VMP1Q96GC9 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC14.17□□□□□ -0.14
VMP1Q96GC9 AC022616.1-201ENST00000518688 554 ntBASIC14.17□□□□□ -0.14
VMP1Q96GC9 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.17□□□□□ -0.14
VMP1Q96GC9 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
VMP1Q96GC9 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.17□□□□□ -0.14
VMP1Q96GC9 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.17□□□□□ -0.14
VMP1Q96GC9 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
VMP1Q96GC9 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
VMP1Q96GC9 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
VMP1Q96GC9 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.17□□□□□ -0.14
VMP1Q96GC9 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
VMP1Q96GC9 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC14.17□□□□□ -0.14
VMP1Q96GC9 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
VMP1Q96GC9 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms