Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 MESTP3-201ENST00000503460 968 ntBASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 AC138466.3-201ENST00000619983 221 ntBASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 SRC-202ENST00000373558 4304 ntTSL 5 BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 FAM90A12P-201ENST00000519497 2375 ntBASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 FAM90A24P-201ENST00000520792 2369 ntBASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 FKBP4P6-201ENST00000457486 1332 ntBASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 TMEM198B-204ENST00000484016 896 ntBASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 RN7SL204P-201ENST00000582831 262 ntBASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 RPSAP52-203ENST00000622976 1023 ntBASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 AC090643.2-201ENST00000623442 2029 ntBASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
ATG4AQ8WYN0 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 AGAP10P-201ENST00000454844 2418 ntBASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 AC009486.1-201ENST00000569860 813 ntBASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 AC027796.2-201ENST00000575326 344 ntBASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms