Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 AC022447.6-201ENST00000515522 438 ntBASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 MT2A-202ENST00000561491 581 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 AC117503.4-201ENST00000623229 1418 ntBASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 MARS-233ENST00000628866 2583 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 AC018529.2-202ENST00000611482 3087 ntBASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 AC019109.1-201ENST00000401725 1874 ntBASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 GDNF-207ENST00000515058 764 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 AL596257.1-201ENST00000641463 2694 ntBASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC88AQ3V6T2 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 STK24P1-201ENST00000455035 1291 ntBASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 RN7SL288P-201ENST00000490496 291 ntBASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 FTX-216ENST00000638985 1367 ntTSL 5 BASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.52■□□□□ 0.39
CCDC88AQ3V6T2 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms