Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HNF4AP41235 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HNF4AP41235 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.31□□□□□ -0.12
HNF4AP41235 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.31□□□□□ -0.12
HNF4AP41235 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
HNF4AP41235 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.31□□□□□ -0.12
HNF4AP41235 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC14.31□□□□□ -0.12
HNF4AP41235 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.31□□□□□ -0.12
HNF4AP41235 RNA5SP486-201ENST00000515961 83 ntBASIC14.31□□□□□ -0.12
HNF4AP41235 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.31□□□□□ -0.12
HNF4AP41235 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.31□□□□□ -0.12
HNF4AP41235 AC078819.1-201ENST00000547454 765 ntBASIC14.31□□□□□ -0.12
HNF4AP41235 AC012085.1-201ENST00000548270 765 ntBASIC14.31□□□□□ -0.12
HNF4AP41235 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.31□□□□□ -0.12
HNF4AP41235 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.31□□□□□ -0.12
HNF4AP41235 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
HNF4AP41235 AL512343.1-201ENST00000605837 169 ntBASIC14.31□□□□□ -0.12
HNF4AP41235 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14.31□□□□□ -0.12
HNF4AP41235 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HNF4AP41235 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.31□□□□□ -0.12
HNF4AP41235 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HNF4AP41235 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HNF4AP41235 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
HNF4AP41235 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.31□□□□□ -0.12
HNF4AP41235 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
HNF4AP41235 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HNF4AP41235 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
HNF4AP41235 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
HNF4AP41235 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
HNF4AP41235 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.31□□□□□ -0.12
HNF4AP41235 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HNF4AP41235 AC131212.3-201ENST00000624087 4219 ntBASIC14.31□□□□□ -0.12
HNF4AP41235 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.31□□□□□ -0.12
HNF4AP41235 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HNF4AP41235 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HNF4AP41235 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
HNF4AP41235 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.31□□□□□ -0.12
HNF4AP41235 AC152010.1-201ENST00000415779 2006 ntBASIC14.31□□□□□ -0.12
HNF4AP41235 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.31□□□□□ -0.12
HNF4AP41235 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.3□□□□□ -0.12
HNF4AP41235 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.3□□□□□ -0.12
HNF4AP41235 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.3□□□□□ -0.12
HNF4AP41235 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.3□□□□□ -0.12
HNF4AP41235 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
HNF4AP41235 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
HNF4AP41235 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.3□□□□□ -0.12
HNF4AP41235 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 PTENP1-202ENST00000532280 3996 ntBASIC14.3□□□□□ -0.12
HNF4AP41235 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
HNF4AP41235 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
HNF4AP41235 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
HNF4AP41235 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC14.3□□□□□ -0.12
HNF4AP41235 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
HNF4AP41235 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC14.3□□□□□ -0.12
HNF4AP41235 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.3□□□□□ -0.12
HNF4AP41235 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
HNF4AP41235 CTBP2P5-201ENST00000454986 1264 ntBASIC14.3□□□□□ -0.12
HNF4AP41235 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.3□□□□□ -0.12
HNF4AP41235 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.3□□□□□ -0.12
HNF4AP41235 AL162274.1-201ENST00000617191 1098 ntBASIC14.3□□□□□ -0.12
HNF4AP41235 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.3□□□□□ -0.12
HNF4AP41235 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.3□□□□□ -0.12
HNF4AP41235 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
HNF4AP41235 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.3□□□□□ -0.12
HNF4AP41235 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.3□□□□□ -0.12
HNF4AP41235 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.3□□□□□ -0.12
HNF4AP41235 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
HNF4AP41235 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
HNF4AP41235 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
HNF4AP41235 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.3□□□□□ -0.12
HNF4AP41235 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 AC015688.4-201ENST00000580780 1647 ntBASIC14.3□□□□□ -0.12
HNF4AP41235 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.3□□□□□ -0.12
HNF4AP41235 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
HNF4AP41235 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HNF4AP41235 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
HNF4AP41235 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms