Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC23.74■■□□□ 1.39
CUX1P39880 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CUX1P39880 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CUX1P39880 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CUX1P39880 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CUX1P39880 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CUX1P39880 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CUX1P39880 NQO2-204ENST00000380454 851 ntTSL 2 BASIC23.74■■□□□ 1.39
CUX1P39880 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
CUX1P39880 OR2W2P-201ENST00000406313 909 ntBASIC23.74■■□□□ 1.39
CUX1P39880 AP000244.1-201ENST00000424582 201 ntBASIC23.74■■□□□ 1.39
CUX1P39880 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
CUX1P39880 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
CUX1P39880 NALT1-202ENST00000450304 437 ntTSL 3 BASIC23.74■■□□□ 1.39
CUX1P39880 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC23.74■■□□□ 1.39
CUX1P39880 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC23.74■■□□□ 1.39
CUX1P39880 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
CUX1P39880 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
CUX1P39880 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CUX1P39880 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC23.73■■□□□ 1.39
CUX1P39880 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
CUX1P39880 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CUX1P39880 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CUX1P39880 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CUX1P39880 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC23.73■■□□□ 1.39
CUX1P39880 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC23.73■■□□□ 1.39
CUX1P39880 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CUX1P39880 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC23.73■■□□□ 1.39
CUX1P39880 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
CUX1P39880 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CUX1P39880 AP000354.1-201ENST00000396982 456 ntBASIC23.73■■□□□ 1.39
CUX1P39880 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC23.73■■□□□ 1.39
CUX1P39880 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC23.73■■□□□ 1.39
CUX1P39880 AC132825.4-202ENST00000578792 434 ntBASIC23.73■■□□□ 1.39
CUX1P39880 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC23.73■■□□□ 1.39
CUX1P39880 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC23.73■■□□□ 1.39
CUX1P39880 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CUX1P39880 AC139713.2-207ENST00000641556 1292 ntBASIC23.73■■□□□ 1.39
CUX1P39880 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC23.73■■□□□ 1.39
CUX1P39880 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CUX1P39880 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CUX1P39880 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
CUX1P39880 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
CUX1P39880 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC23.72■■□□□ 1.39
CUX1P39880 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CUX1P39880 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CUX1P39880 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC23.72■■□□□ 1.39
CUX1P39880 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CUX1P39880 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CUX1P39880 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
CUX1P39880 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC23.72■■□□□ 1.39
CUX1P39880 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CUX1P39880 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC23.72■■□□□ 1.39
CUX1P39880 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC23.72■■□□□ 1.39
CUX1P39880 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CUX1P39880 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
CUX1P39880 SSR4-202ENST00000370085 526 ntTSL 2 BASIC23.72■■□□□ 1.39
CUX1P39880 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC23.72■■□□□ 1.39
CUX1P39880 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CUX1P39880 PTPN20CP-201ENST00000614090 920 ntBASIC23.72■■□□□ 1.39
CUX1P39880 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
CUX1P39880 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CUX1P39880 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC23.72■■□□□ 1.39
CUX1P39880 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
CUX1P39880 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
CUX1P39880 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CUX1P39880 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
CUX1P39880 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
CUX1P39880 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CUX1P39880 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC23.72■■□□□ 1.39
CUX1P39880 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC23.71■■□□□ 1.39
CUX1P39880 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC23.71■■□□□ 1.39
CUX1P39880 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CUX1P39880 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC23.71■■□□□ 1.39
CUX1P39880 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CUX1P39880 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CUX1P39880 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CUX1P39880 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
CUX1P39880 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CUX1P39880 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
CUX1P39880 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
CUX1P39880 SNORA57-201ENST00000383870 149 ntBASIC23.71■■□□□ 1.39
CUX1P39880 AL157823.1-201ENST00000403727 628 ntBASIC23.71■■□□□ 1.39
CUX1P39880 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC23.71■■□□□ 1.39
CUX1P39880 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC23.71■■□□□ 1.39
CUX1P39880 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CUX1P39880 CD81-209ENST00000492627 886 ntTSL 3 BASIC23.71■■□□□ 1.39
CUX1P39880 GOLGA2P8-201ENST00000505201 779 ntBASIC23.71■■□□□ 1.39
CUX1P39880 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC23.71■■□□□ 1.39
CUX1P39880 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC23.71■■□□□ 1.39
CUX1P39880 FTLP5-201ENST00000586853 534 ntBASIC23.71■■□□□ 1.39
CUX1P39880 PRMT1P1-201ENST00000604252 1009 ntBASIC23.71■■□□□ 1.39
CUX1P39880 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC23.71■■□□□ 1.39
CUX1P39880 URAHP-205ENST00000610227 398 ntBASIC23.71■■□□□ 1.39
CUX1P39880 AC090510.3-201ENST00000615831 821 ntBASIC23.71■■□□□ 1.39
CUX1P39880 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CUX1P39880 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC23.71■■□□□ 1.39
CUX1P39880 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
CUX1P39880 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
CUX1P39880 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms