Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC13.71□□□□□ -0.22
COL5A1P20908 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.71□□□□□ -0.22
COL5A1P20908 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
COL5A1P20908 SRP14-204ENST00000558720 780 ntTSL 2 BASIC13.71□□□□□ -0.22
COL5A1P20908 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.22
COL5A1P20908 GAS7-216ENST00000583882 553 ntTSL 5 BASIC13.71□□□□□ -0.22
COL5A1P20908 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL5A1P20908 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL5A1P20908 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC13.7□□□□□ -0.22
COL5A1P20908 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC13.7□□□□□ -0.22
COL5A1P20908 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL5A1P20908 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL5A1P20908 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC13.7□□□□□ -0.22
COL5A1P20908 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.7□□□□□ -0.22
COL5A1P20908 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC13.7□□□□□ -0.22
COL5A1P20908 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL5A1P20908 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL5A1P20908 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
COL5A1P20908 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL5A1P20908 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL5A1P20908 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL5A1P20908 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.7□□□□□ -0.22
COL5A1P20908 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC13.7□□□□□ -0.22
COL5A1P20908 MTHFR-210ENST00000641407 2387 ntBASIC13.7□□□□□ -0.22
COL5A1P20908 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL5A1P20908 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC13.7□□□□□ -0.22
COL5A1P20908 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL5A1P20908 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL5A1P20908 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL5A1P20908 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
COL5A1P20908 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC13.7□□□□□ -0.22
COL5A1P20908 BPIFB5P-201ENST00000457066 1099 ntBASIC13.7□□□□□ -0.22
COL5A1P20908 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC13.7□□□□□ -0.22
COL5A1P20908 AC092862.1-201ENST00000541534 533 ntBASIC13.7□□□□□ -0.22
COL5A1P20908 AC068831.5-201ENST00000557387 328 ntBASIC13.7□□□□□ -0.22
COL5A1P20908 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC13.7□□□□□ -0.22
COL5A1P20908 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC13.7□□□□□ -0.22
COL5A1P20908 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC13.7□□□□□ -0.22
COL5A1P20908 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC13.7□□□□□ -0.22
COL5A1P20908 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
COL5A1P20908 AL359091.4-201ENST00000610052 409 ntBASIC13.7□□□□□ -0.22
COL5A1P20908 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL5A1P20908 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC13.7□□□□□ -0.22
COL5A1P20908 AMT-256ENST00000638063 1783 ntTSL 5 BASIC13.7□□□□□ -0.22
COL5A1P20908 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL5A1P20908 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
COL5A1P20908 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.7□□□□□ -0.22
COL5A1P20908 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL5A1P20908 ODCP-201ENST00000459650 1639 ntBASIC13.7□□□□□ -0.22
COL5A1P20908 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC13.7□□□□□ -0.22
COL5A1P20908 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL5A1P20908 KRT8P43-201ENST00000406052 1458 ntBASIC13.7□□□□□ -0.22
COL5A1P20908 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL5A1P20908 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
COL5A1P20908 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
COL5A1P20908 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL5A1P20908 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC13.7□□□□□ -0.22
COL5A1P20908 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
COL5A1P20908 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.69□□□□□ -0.22
COL5A1P20908 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
COL5A1P20908 PIFO-201ENST00000369737 746 ntTSL 2 BASIC13.69□□□□□ -0.22
COL5A1P20908 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
COL5A1P20908 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 AC073210.1-201ENST00000414799 232 ntBASIC13.69□□□□□ -0.22
COL5A1P20908 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC13.69□□□□□ -0.22
COL5A1P20908 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC13.69□□□□□ -0.22
COL5A1P20908 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC13.69□□□□□ -0.22
COL5A1P20908 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC13.69□□□□□ -0.22
COL5A1P20908 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC13.69□□□□□ -0.22
COL5A1P20908 CHCHD2P2-201ENST00000503744 321 ntBASIC13.69□□□□□ -0.22
COL5A1P20908 RBM4-207ENST00000506523 654 ntTSL 3 BASIC13.69□□□□□ -0.22
COL5A1P20908 FAM86KP-201ENST00000509817 987 ntBASIC13.69□□□□□ -0.22
COL5A1P20908 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC13.69□□□□□ -0.22
COL5A1P20908 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.69□□□□□ -0.22
COL5A1P20908 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC13.69□□□□□ -0.22
COL5A1P20908 DLK1-205ENST00000556051 469 ntTSL 2 BASIC13.69□□□□□ -0.22
COL5A1P20908 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC13.69□□□□□ -0.22
COL5A1P20908 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC13.69□□□□□ -0.22
COL5A1P20908 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 AC006548.2-201ENST00000605217 529 ntBASIC13.69□□□□□ -0.22
COL5A1P20908 MIR6074-201ENST00000612054 107 ntBASIC13.69□□□□□ -0.22
COL5A1P20908 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC13.69□□□□□ -0.22
COL5A1P20908 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC13.69□□□□□ -0.22
COL5A1P20908 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
COL5A1P20908 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL5A1P20908 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms