Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL9A1P20849 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL9A1P20849 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL9A1P20849 FABP5-201ENST00000297258 851 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL9A1P20849 FAM86FP-201ENST00000338711 969 ntBASIC14.97□□□□□ -0.01
COL9A1P20849 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL9A1P20849 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC14.97□□□□□ -0.01
COL9A1P20849 GUSBP10-201ENST00000417412 665 ntBASIC14.97□□□□□ -0.01
COL9A1P20849 AC073310.1-201ENST00000423226 1033 ntBASIC14.97□□□□□ -0.01
COL9A1P20849 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC14.97□□□□□ -0.01
COL9A1P20849 LINC01824-201ENST00000436082 528 ntTSL 4 BASIC14.97□□□□□ -0.01
COL9A1P20849 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC14.97□□□□□ -0.01
COL9A1P20849 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
COL9A1P20849 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC14.97□□□□□ -0.01
COL9A1P20849 GNG10P1-201ENST00000452289 199 ntBASIC14.97□□□□□ -0.01
COL9A1P20849 TPT1P6-201ENST00000458298 514 ntBASIC14.97□□□□□ -0.01
COL9A1P20849 TPT1P11-201ENST00000458482 498 ntBASIC14.97□□□□□ -0.01
COL9A1P20849 RN7SL288P-201ENST00000490496 291 ntBASIC14.97□□□□□ -0.01
COL9A1P20849 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC14.97□□□□□ -0.01
COL9A1P20849 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC14.97□□□□□ -0.01
COL9A1P20849 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC14.97□□□□□ -0.01
COL9A1P20849 KNOP1P1-201ENST00000542108 989 ntBASIC14.97□□□□□ -0.01
COL9A1P20849 AC138701.2-201ENST00000553634 226 ntBASIC14.97□□□□□ -0.01
COL9A1P20849 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC14.97□□□□□ -0.01
COL9A1P20849 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC14.97□□□□□ -0.01
COL9A1P20849 MTATP6P25-201ENST00000574491 261 ntBASIC14.97□□□□□ -0.01
COL9A1P20849 RN7SL357P-201ENST00000581065 298 ntBASIC14.97□□□□□ -0.01
COL9A1P20849 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC14.97□□□□□ -0.01
COL9A1P20849 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL9A1P20849 AC008825.2-201ENST00000603374 718 ntBASIC14.97□□□□□ -0.01
COL9A1P20849 AC140113.1-201ENST00000603467 169 ntBASIC14.97□□□□□ -0.01
COL9A1P20849 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL9A1P20849 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL9A1P20849 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL9A1P20849 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL9A1P20849 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.97□□□□□ -0.01
COL9A1P20849 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL9A1P20849 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC14.97□□□□□ -0.01
COL9A1P20849 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL9A1P20849 HLA-DQB1-202ENST00000399079 1501 ntBASIC14.97□□□□□ -0.01
COL9A1P20849 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.97□□□□□ -0.01
COL9A1P20849 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL9A1P20849 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.96□□□□□ -0.01
COL9A1P20849 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL9A1P20849 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL9A1P20849 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
COL9A1P20849 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL9A1P20849 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL9A1P20849 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
COL9A1P20849 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL9A1P20849 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC14.96□□□□□ -0.01
COL9A1P20849 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.96□□□□□ -0.01
COL9A1P20849 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.96□□□□□ -0.01
COL9A1P20849 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL9A1P20849 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.96□□□□□ -0.01
COL9A1P20849 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.96□□□□□ -0.01
COL9A1P20849 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL9A1P20849 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
COL9A1P20849 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
COL9A1P20849 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL9A1P20849 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL9A1P20849 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC14.96□□□□□ -0.01
COL9A1P20849 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL9A1P20849 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
COL9A1P20849 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL9A1P20849 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.96□□□□□ -0.01
COL9A1P20849 AC010082.1-201ENST00000411797 546 ntTSL 2 BASIC14.96□□□□□ -0.01
COL9A1P20849 HNRNPA1P59-201ENST00000430583 918 ntBASIC14.96□□□□□ -0.01
COL9A1P20849 AC131235.2-201ENST00000445553 1057 ntBASIC14.96□□□□□ -0.01
COL9A1P20849 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL9A1P20849 CICP12-201ENST00000455801 843 ntBASIC14.96□□□□□ -0.01
COL9A1P20849 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC14.96□□□□□ -0.01
COL9A1P20849 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.96□□□□□ -0.01
COL9A1P20849 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC14.96□□□□□ -0.01
COL9A1P20849 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC14.96□□□□□ -0.01
COL9A1P20849 KRT8P31-201ENST00000504812 1408 ntBASIC14.96□□□□□ -0.01
COL9A1P20849 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC14.96□□□□□ -0.01
COL9A1P20849 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
COL9A1P20849 AC025423.2-201ENST00000537570 439 ntBASIC14.96□□□□□ -0.01
COL9A1P20849 AC092862.1-201ENST00000541534 533 ntBASIC14.96□□□□□ -0.01
COL9A1P20849 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC14.96□□□□□ -0.01
COL9A1P20849 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC14.96□□□□□ -0.01
COL9A1P20849 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
COL9A1P20849 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC14.96□□□□□ -0.01
COL9A1P20849 MIR6720-201ENST00000611664 98 ntBASIC14.96□□□□□ -0.01
COL9A1P20849 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.96□□□□□ -0.01
COL9A1P20849 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC14.96□□□□□ -0.01
COL9A1P20849 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.96□□□□□ -0.01
COL9A1P20849 AP000280.1-201ENST00000624800 832 ntBASIC14.96□□□□□ -0.01
COL9A1P20849 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.96□□□□□ -0.01
COL9A1P20849 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
COL9A1P20849 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL9A1P20849 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
COL9A1P20849 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL9A1P20849 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.96□□□□□ -0.01
COL9A1P20849 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL9A1P20849 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.96□□□□□ -0.02
COL9A1P20849 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL9A1P20849 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.96□□□□□ -0.02
COL9A1P20849 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.96□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms