Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC13.99□□□□□ -0.17
SDC1P18827 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.17
SDC1P18827 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC13.99□□□□□ -0.17
SDC1P18827 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.99□□□□□ -0.17
SDC1P18827 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
SDC1P18827 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
SDC1P18827 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
SDC1P18827 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
SDC1P18827 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.99□□□□□ -0.17
SDC1P18827 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC13.99□□□□□ -0.17
SDC1P18827 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
SDC1P18827 AC005229.1-201ENST00000392885 409 ntBASIC13.99□□□□□ -0.17
SDC1P18827 AC004945.1-201ENST00000416738 983 ntBASIC13.99□□□□□ -0.17
SDC1P18827 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC13.99□□□□□ -0.17
SDC1P18827 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.99□□□□□ -0.17
SDC1P18827 OR10B1P-201ENST00000601666 907 ntBASIC13.99□□□□□ -0.17
SDC1P18827 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
SDC1P18827 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC13.99□□□□□ -0.17
SDC1P18827 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
SDC1P18827 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
SDC1P18827 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC13.99□□□□□ -0.17
SDC1P18827 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.99□□□□□ -0.17
SDC1P18827 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.99□□□□□ -0.17
SDC1P18827 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC13.99□□□□□ -0.17
SDC1P18827 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
SDC1P18827 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC13.99□□□□□ -0.17
SDC1P18827 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC13.99□□□□□ -0.17
SDC1P18827 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.99□□□□□ -0.17
SDC1P18827 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC13.99□□□□□ -0.17
SDC1P18827 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
SDC1P18827 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
SDC1P18827 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SDC1P18827 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.99□□□□□ -0.17
SDC1P18827 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC13.99□□□□□ -0.17
SDC1P18827 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC13.98□□□□□ -0.17
SDC1P18827 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SDC1P18827 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
SDC1P18827 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDC1P18827 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SDC1P18827 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDC1P18827 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDC1P18827 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC13.98□□□□□ -0.17
SDC1P18827 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC13.98□□□□□ -0.17
SDC1P18827 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDC1P18827 AC130686.1-201ENST00000622936 2466 ntBASIC13.98□□□□□ -0.17
SDC1P18827 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDC1P18827 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SDC1P18827 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDC1P18827 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDC1P18827 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.98□□□□□ -0.17
SDC1P18827 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
SDC1P18827 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDC1P18827 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
SDC1P18827 AC092933.1-201ENST00000393644 945 ntBASIC13.98□□□□□ -0.17
SDC1P18827 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC13.98□□□□□ -0.17
SDC1P18827 ARSEP1-201ENST00000420443 635 ntBASIC13.98□□□□□ -0.17
SDC1P18827 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SDC1P18827 CDC23-208ENST00000505120 455 ntTSL 3 BASIC13.98□□□□□ -0.17
SDC1P18827 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC13.98□□□□□ -0.17
SDC1P18827 RNA5SP486-201ENST00000515961 83 ntBASIC13.98□□□□□ -0.17
SDC1P18827 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.98□□□□□ -0.17
SDC1P18827 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC13.98□□□□□ -0.17
SDC1P18827 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
SDC1P18827 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
SDC1P18827 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
SDC1P18827 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
SDC1P18827 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.98□□□□□ -0.17
SDC1P18827 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC13.98□□□□□ -0.17
SDC1P18827 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SDC1P18827 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC13.98□□□□□ -0.17
SDC1P18827 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDC1P18827 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC13.98□□□□□ -0.17
SDC1P18827 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC13.98□□□□□ -0.17
SDC1P18827 AC002472.3-201ENST00000640124 621 ntBASIC13.98□□□□□ -0.17
SDC1P18827 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDC1P18827 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SDC1P18827 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC13.98□□□□□ -0.17
SDC1P18827 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDC1P18827 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.98□□□□□ -0.17
SDC1P18827 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms