Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC13.52□□□□□ -0.25
NKX2-2O95096 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.52□□□□□ -0.25
NKX2-2O95096 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
NKX2-2O95096 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
NKX2-2O95096 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
NKX2-2O95096 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
NKX2-2O95096 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 AL928921.2-201ENST00000641325 2442 ntBASIC13.51□□□□□ -0.25
NKX2-2O95096 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC13.51□□□□□ -0.25
NKX2-2O95096 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX2-2O95096 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 AC015818.8-201ENST00000587907 1519 ntBASIC13.51□□□□□ -0.25
NKX2-2O95096 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC13.51□□□□□ -0.25
NKX2-2O95096 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
NKX2-2O95096 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
NKX2-2O95096 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX2-2O95096 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX2-2O95096 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.51□□□□□ -0.25
NKX2-2O95096 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC13.51□□□□□ -0.25
NKX2-2O95096 FAM21FP-201ENST00000426241 1131 ntBASIC13.51□□□□□ -0.25
NKX2-2O95096 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
NKX2-2O95096 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC13.51□□□□□ -0.25
NKX2-2O95096 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX2-2O95096 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.51□□□□□ -0.25
NKX2-2O95096 HNRNPA1P36-201ENST00000521313 955 ntBASIC13.51□□□□□ -0.25
NKX2-2O95096 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX2-2O95096 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC13.51□□□□□ -0.25
NKX2-2O95096 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
NKX2-2O95096 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.51□□□□□ -0.25
NKX2-2O95096 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC13.51□□□□□ -0.25
NKX2-2O95096 AL162426.1-201ENST00000624141 743 ntBASIC13.51□□□□□ -0.25
NKX2-2O95096 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
NKX2-2O95096 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.51□□□□□ -0.25
NKX2-2O95096 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX2-2O95096 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
NKX2-2O95096 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
NKX2-2O95096 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.51□□□□□ -0.25
NKX2-2O95096 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC13.51□□□□□ -0.25
NKX2-2O95096 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
NKX2-2O95096 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-2O95096 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX2-2O95096 FAS-202ENST00000352159 1722 ntTSL 5 BASIC13.5□□□□□ -0.25
NKX2-2O95096 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
NKX2-2O95096 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.5□□□□□ -0.25
NKX2-2O95096 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX2-2O95096 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.5□□□□□ -0.25
NKX2-2O95096 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.25
NKX2-2O95096 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC13.5□□□□□ -0.25
NKX2-2O95096 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 AL008718.2-201ENST00000609206 1313 ntBASIC13.5□□□□□ -0.25
NKX2-2O95096 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 OR8S1-201ENST00000310194 1080 ntBASIC13.5□□□□□ -0.25
NKX2-2O95096 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX2-2O95096 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC13.5□□□□□ -0.25
NKX2-2O95096 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms