Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC20■□□□□ 0.79
NPHP4O75161 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP4O75161 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP4O75161 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP4O75161 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP4O75161 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP4O75161 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP4O75161 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
NPHP4O75161 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP4O75161 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC19.99■□□□□ 0.79
NPHP4O75161 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
NPHP4O75161 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.99■□□□□ 0.79
NPHP4O75161 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC19.99■□□□□ 0.79
NPHP4O75161 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
NPHP4O75161 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP4O75161 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP4O75161 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP4O75161 JPT2-203ENST00000382711 894 ntTSL 4 BASIC19.99■□□□□ 0.79
NPHP4O75161 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC19.99■□□□□ 0.79
NPHP4O75161 AC092810.2-201ENST00000431570 362 ntBASIC19.99■□□□□ 0.79
NPHP4O75161 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
NPHP4O75161 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP4O75161 TBC1D3P6-201ENST00000505954 962 ntBASIC19.99■□□□□ 0.79
NPHP4O75161 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC19.99■□□□□ 0.79
NPHP4O75161 HCG18-241ENST00000602290 821 ntTSL 2 BASIC19.99■□□□□ 0.79
NPHP4O75161 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC19.99■□□□□ 0.79
NPHP4O75161 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC19.99■□□□□ 0.79
NPHP4O75161 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
NPHP4O75161 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC19.99■□□□□ 0.79
NPHP4O75161 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC19.99■□□□□ 0.79
NPHP4O75161 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
NPHP4O75161 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC19.99■□□□□ 0.79
NPHP4O75161 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC19.99■□□□□ 0.79
NPHP4O75161 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP4O75161 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC19.99■□□□□ 0.79
NPHP4O75161 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC19.99■□□□□ 0.79
NPHP4O75161 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP4O75161 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP4O75161 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP4O75161 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP4O75161 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP4O75161 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
NPHP4O75161 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC19.98■□□□□ 0.79
NPHP4O75161 EEF1DP2-201ENST00000433698 843 ntBASIC19.98■□□□□ 0.79
NPHP4O75161 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP4O75161 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC19.98■□□□□ 0.79
NPHP4O75161 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP4O75161 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP4O75161 MYL6-215ENST00000549566 685 ntTSL 2 BASIC19.98■□□□□ 0.79
NPHP4O75161 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC19.98■□□□□ 0.79
NPHP4O75161 AC132825.4-202ENST00000578792 434 ntBASIC19.98■□□□□ 0.79
NPHP4O75161 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP4O75161 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP4O75161 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP4O75161 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.98■□□□□ 0.79
NPHP4O75161 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.98■□□□□ 0.79
NPHP4O75161 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP4O75161 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP4O75161 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC19.98■□□□□ 0.79
NPHP4O75161 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP4O75161 AMT-256ENST00000638063 1783 ntTSL 5 BASIC19.98■□□□□ 0.79
NPHP4O75161 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC19.97■□□□□ 0.79
NPHP4O75161 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC19.97■□□□□ 0.79
NPHP4O75161 AC092115.1-201ENST00000566277 1402 ntBASIC19.97■□□□□ 0.79
NPHP4O75161 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP4O75161 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC19.97■□□□□ 0.79
NPHP4O75161 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP4O75161 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC19.97■□□□□ 0.79
NPHP4O75161 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP4O75161 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP4O75161 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.97■□□□□ 0.79
NPHP4O75161 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC19.97■□□□□ 0.79
NPHP4O75161 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP4O75161 VDAC1P11-201ENST00000458323 852 ntBASIC19.97■□□□□ 0.79
NPHP4O75161 AC099328.1-201ENST00000498809 1030 ntBASIC19.97■□□□□ 0.79
NPHP4O75161 SORD2P-201ENST00000558556 1069 ntBASIC19.97■□□□□ 0.79
NPHP4O75161 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP4O75161 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP4O75161 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP4O75161 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP4O75161 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP4O75161 RPL13AP3-202ENST00000494676 1473 ntBASIC19.97■□□□□ 0.79
NPHP4O75161 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC19.97■□□□□ 0.79
NPHP4O75161 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP4O75161 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP4O75161 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP4O75161 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP4O75161 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC19.97■□□□□ 0.79
NPHP4O75161 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
NPHP4O75161 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.96■□□□□ 0.79
NPHP4O75161 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
NPHP4O75161 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP4O75161 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP4O75161 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
NPHP4O75161 U3.5-201ENST00000363448 216 ntBASIC19.96■□□□□ 0.79
NPHP4O75161 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC19.96■□□□□ 0.79
NPHP4O75161 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC19.96■□□□□ 0.79
NPHP4O75161 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC19.96■□□□□ 0.79
NPHP4O75161 AP000533.1-201ENST00000456143 1177 ntBASIC19.96■□□□□ 0.79
NPHP4O75161 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms