Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 C9orf170-201ENST00000623052 3239 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 LINC01993-201ENST00000374945 2934 ntTSL 2 BASIC14.7□□□□□ -0.06
SHOX2O60902 DGKA-202ENST00000394147 2770 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
SHOX2O60902 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC14.7□□□□□ -0.06
SHOX2O60902 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
SHOX2O60902 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 BCAS3-221ENST00000588874 2948 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
SHOX2O60902 AC093525.8-201ENST00000624099 1342 ntBASIC14.69□□□□□ -0.06
SHOX2O60902 STAT6-202ENST00000454075 3037 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
SHOX2O60902 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.69□□□□□ -0.06
SHOX2O60902 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 C10orf90-202ENST00000356858 2995 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
SHOX2O60902 DTX1-201ENST00000257600 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
SHOX2O60902 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
SHOX2O60902 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC14.69□□□□□ -0.06
SHOX2O60902 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
SHOX2O60902 SLC25A1P1-201ENST00000528351 927 ntBASIC14.69□□□□□ -0.06
SHOX2O60902 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC14.69□□□□□ -0.06
SHOX2O60902 AC106730.1-201ENST00000566722 1090 ntBASIC14.69□□□□□ -0.06
SHOX2O60902 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.69□□□□□ -0.06
SHOX2O60902 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.69□□□□□ -0.06
SHOX2O60902 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC14.69□□□□□ -0.06
SHOX2O60902 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
SHOX2O60902 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC14.69□□□□□ -0.06
SHOX2O60902 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.69□□□□□ -0.06
SHOX2O60902 ZNF595-205ENST00000610261 2911 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.69□□□□□ -0.06
SHOX2O60902 AL022313.4-201ENST00000562756 2046 ntBASIC14.69□□□□□ -0.06
SHOX2O60902 ANKRD49-210ENST00000544612 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 TRIM3-203ENST00000525074 3044 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
SHOX2O60902 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
SHOX2O60902 PLEKHG3-203ENST00000471182 3106 ntTSL 5 BASIC14.69□□□□□ -0.06
SHOX2O60902 AC004899.2-201ENST00000622993 3860 ntBASIC14.69□□□□□ -0.06
SHOX2O60902 LINC02015-202ENST00000436078 2957 ntTSL 2 BASIC14.69□□□□□ -0.06
SHOX2O60902 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
SHOX2O60902 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
SHOX2O60902 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 ILDR1-201ENST00000273691 2659 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHOX2O60902 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
SHOX2O60902 CPT1C-204ENST00000405931 2785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 MRPL37P1-201ENST00000592451 1337 ntBASIC14.68□□□□□ -0.06
SHOX2O60902 PACSIN2-202ENST00000337959 3149 ntTSL 5 BASIC14.68□□□□□ -0.06
SHOX2O60902 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
SHOX2O60902 KCNMA1-232ENST00000638306 3811 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
SHOX2O60902 L3MBTL1-203ENST00000373135 3218 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 SLC28A1-201ENST00000286749 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 CPEB4-208ENST00000520867 2607 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
SHOX2O60902 MICAL1-208ENST00000630715 3678 ntTSL 2 BASIC14.68□□□□□ -0.06
SHOX2O60902 GHITM-201ENST00000372134 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 HNRNPH1-216ENST00000510411 2105 ntTSL 5 BASIC14.68□□□□□ -0.06
SHOX2O60902 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.68□□□□□ -0.06
SHOX2O60902 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
SHOX2O60902 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
SHOX2O60902 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
SHOX2O60902 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
SHOX2O60902 TFAMP1-201ENST00000412727 736 ntBASIC14.68□□□□□ -0.06
SHOX2O60902 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC14.68□□□□□ -0.06
SHOX2O60902 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC14.68□□□□□ -0.06
SHOX2O60902 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC14.68□□□□□ -0.06
SHOX2O60902 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC14.68□□□□□ -0.06
SHOX2O60902 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC14.68□□□□□ -0.06
SHOX2O60902 AC000095.1-201ENST00000603208 874 ntBASIC14.68□□□□□ -0.06
SHOX2O60902 AC091812.2-201ENST00000619081 385 ntBASIC14.68□□□□□ -0.06
SHOX2O60902 AF228730.6-201ENST00000641497 218 ntBASIC14.68□□□□□ -0.06
SHOX2O60902 AC084121.3-201ENST00000641716 218 ntBASIC14.68□□□□□ -0.06
SHOX2O60902 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 AC022364.1-202ENST00000617468 2409 ntBASIC14.68□□□□□ -0.06
SHOX2O60902 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 SLC25A18-202ENST00000399813 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC14.68□□□□□ -0.06
SHOX2O60902 DPAGT1-217ENST00000639704 1719 ntTSL 5 BASIC14.68□□□□□ -0.06
SHOX2O60902 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
SHOX2O60902 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms