Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC18.75■□□□□ 0.59
ABCA3Q99758 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC18.75■□□□□ 0.59
ABCA3Q99758 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ABCA3Q99758 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC18.75■□□□□ 0.59
ABCA3Q99758 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
ABCA3Q99758 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 AHCYP3-201ENST00000420053 1279 ntBASIC18.74■□□□□ 0.59
ABCA3Q99758 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 AL773545.2-201ENST00000442149 472 ntBASIC18.74■□□□□ 0.59
ABCA3Q99758 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC18.74■□□□□ 0.59
ABCA3Q99758 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC18.74■□□□□ 0.59
ABCA3Q99758 AC011431.1-201ENST00000512971 230 ntBASIC18.74■□□□□ 0.59
ABCA3Q99758 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
ABCA3Q99758 URB1-AS1-201ENST00000534991 831 ntBASIC18.74■□□□□ 0.59
ABCA3Q99758 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC18.74■□□□□ 0.59
ABCA3Q99758 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
ABCA3Q99758 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
ABCA3Q99758 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC18.74■□□□□ 0.59
ABCA3Q99758 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC18.74■□□□□ 0.59
ABCA3Q99758 AIG1-203ENST00000367596 559 ntTSL 2 BASIC18.74■□□□□ 0.59
ABCA3Q99758 DKKL1P1-201ENST00000400550 698 ntBASIC18.74■□□□□ 0.59
ABCA3Q99758 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC18.74■□□□□ 0.59
ABCA3Q99758 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.74■□□□□ 0.59
ABCA3Q99758 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC18.74■□□□□ 0.59
ABCA3Q99758 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC18.74■□□□□ 0.59
ABCA3Q99758 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ABCA3Q99758 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC18.73■□□□□ 0.59
ABCA3Q99758 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ABCA3Q99758 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ABCA3Q99758 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ABCA3Q99758 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ABCA3Q99758 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.73■□□□□ 0.59
ABCA3Q99758 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
ABCA3Q99758 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
ABCA3Q99758 ZEB1-AS1-208ENST00000607166 2503 ntBASIC18.73■□□□□ 0.59
ABCA3Q99758 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC18.73■□□□□ 0.59
ABCA3Q99758 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC18.73■□□□□ 0.59
ABCA3Q99758 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ABCA3Q99758 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ABCA3Q99758 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC18.73■□□□□ 0.59
ABCA3Q99758 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC18.73■□□□□ 0.59
ABCA3Q99758 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC18.73■□□□□ 0.59
ABCA3Q99758 AC005722.1-201ENST00000431878 964 ntBASIC18.73■□□□□ 0.59
ABCA3Q99758 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC18.73■□□□□ 0.59
ABCA3Q99758 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC18.73■□□□□ 0.59
ABCA3Q99758 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ABCA3Q99758 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC18.73■□□□□ 0.59
ABCA3Q99758 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
ABCA3Q99758 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.73■□□□□ 0.59
ABCA3Q99758 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
ABCA3Q99758 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ABCA3Q99758 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC18.73■□□□□ 0.59
ABCA3Q99758 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
ABCA3Q99758 PARN-202ENST00000420015 2360 ntTSL 2 BASIC18.72■□□□□ 0.59
ABCA3Q99758 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
ABCA3Q99758 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
ABCA3Q99758 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.72■□□□□ 0.59
ABCA3Q99758 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
ABCA3Q99758 PGR-210ENST00000619228 3038 ntTSL 5 BASIC18.72■□□□□ 0.59
ABCA3Q99758 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
ABCA3Q99758 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ABCA3Q99758 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
ABCA3Q99758 DPY19L2P4-201ENST00000479881 442 ntBASIC18.72■□□□□ 0.59
ABCA3Q99758 AC103702.1-201ENST00000548801 2630 ntBASIC18.72■□□□□ 0.59
ABCA3Q99758 RN7SL440P-201ENST00000577855 343 ntBASIC18.72■□□□□ 0.59
ABCA3Q99758 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC18.72■□□□□ 0.59
ABCA3Q99758 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC18.72■□□□□ 0.59
ABCA3Q99758 EMP3-204ENST00000596315 761 ntTSL 2 BASIC18.72■□□□□ 0.59
ABCA3Q99758 AC106782.5-201ENST00000616011 337 ntBASIC18.72■□□□□ 0.59
ABCA3Q99758 AC009041.4-201ENST00000620075 638 ntBASIC18.72■□□□□ 0.59
ABCA3Q99758 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ABCA3Q99758 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ABCA3Q99758 DOC2GP-204ENST00000639052 2548 ntBASIC18.72■□□□□ 0.59
ABCA3Q99758 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC18.72■□□□□ 0.59
ABCA3Q99758 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ABCA3Q99758 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
ABCA3Q99758 HLF-202ENST00000430986 1385 ntTSL 2 BASIC18.72■□□□□ 0.59
ABCA3Q99758 AC011498.7-201ENST00000624986 2027 ntBASIC18.72■□□□□ 0.59
ABCA3Q99758 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.72■□□□□ 0.59
ABCA3Q99758 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ABCA3Q99758 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC18.72■□□□□ 0.59
ABCA3Q99758 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
ABCA3Q99758 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms