Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL12A1Q99715 MAL-202ENST00000349807 705 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL12A1Q99715 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC12.49□□□□□ -0.41
COL12A1Q99715 RNF7-205ENST00000480908 782 ntTSL 4 BASIC12.49□□□□□ -0.41
COL12A1Q99715 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC12.49□□□□□ -0.41
COL12A1Q99715 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL12A1Q99715 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC12.49□□□□□ -0.41
COL12A1Q99715 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC12.49□□□□□ -0.41
COL12A1Q99715 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
COL12A1Q99715 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL12A1Q99715 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
COL12A1Q99715 HTR7P1-202ENST00000624664 4411 ntBASIC12.49□□□□□ -0.41
COL12A1Q99715 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC12.49□□□□□ -0.41
COL12A1Q99715 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL12A1Q99715 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC12.48□□□□□ -0.41
COL12A1Q99715 AC073869.2-201ENST00000417338 1026 ntBASIC12.48□□□□□ -0.41
COL12A1Q99715 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC12.48□□□□□ -0.41
COL12A1Q99715 HNRNPA1P21-201ENST00000424115 961 ntBASIC12.48□□□□□ -0.41
COL12A1Q99715 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC12.48□□□□□ -0.41
COL12A1Q99715 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC12.48□□□□□ -0.41
COL12A1Q99715 RN7SL767P-201ENST00000493013 295 ntBASIC12.48□□□□□ -0.41
COL12A1Q99715 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
COL12A1Q99715 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
COL12A1Q99715 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC12.48□□□□□ -0.41
COL12A1Q99715 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
COL12A1Q99715 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
COL12A1Q99715 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC12.48□□□□□ -0.41
COL12A1Q99715 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC12.48□□□□□ -0.41
COL12A1Q99715 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC12.48□□□□□ -0.41
COL12A1Q99715 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC12.48□□□□□ -0.41
COL12A1Q99715 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC12.48□□□□□ -0.41
COL12A1Q99715 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC12.48□□□□□ -0.41
COL12A1Q99715 AL137244.1-201ENST00000422931 865 ntBASIC12.48□□□□□ -0.41
COL12A1Q99715 FAM86JP-202ENST00000484500 988 ntBASIC12.48□□□□□ -0.41
COL12A1Q99715 VPS18-202ENST00000558474 873 ntTSL 3 BASIC12.48□□□□□ -0.41
COL12A1Q99715 AC007728.1-202ENST00000564510 787 ntTSL 3 BASIC12.48□□□□□ -0.41
COL12A1Q99715 AC021072.1-201ENST00000635789 835 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
COL12A1Q99715 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 TEKT4P2-202ENST00000559466 1312 ntBASIC12.48□□□□□ -0.41
COL12A1Q99715 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC12.48□□□□□ -0.41
COL12A1Q99715 AC117503.4-201ENST00000623229 1418 ntBASIC12.48□□□□□ -0.41
COL12A1Q99715 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
COL12A1Q99715 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
COL12A1Q99715 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC12.48□□□□□ -0.41
COL12A1Q99715 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 LCE4A-201ENST00000335535 388 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
COL12A1Q99715 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC12.48□□□□□ -0.41
COL12A1Q99715 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL12A1Q99715 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
COL12A1Q99715 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC12.48□□□□□ -0.41
COL12A1Q99715 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC12.48□□□□□ -0.41
COL12A1Q99715 CYP4F29P-202ENST00000428301 1279 ntTSL 2 BASIC12.48□□□□□ -0.41
COL12A1Q99715 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC12.48□□□□□ -0.41
COL12A1Q99715 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
COL12A1Q99715 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC12.48□□□□□ -0.41
COL12A1Q99715 HMOX2-213ENST00000575120 1027 ntTSL 3 BASIC12.48□□□□□ -0.41
COL12A1Q99715 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC12.48□□□□□ -0.41
COL12A1Q99715 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
COL12A1Q99715 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC12.48□□□□□ -0.41
COL12A1Q99715 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
COL12A1Q99715 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 KHSRPP1-201ENST00000427983 1768 ntBASIC12.47□□□□□ -0.41
COL12A1Q99715 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC12.47□□□□□ -0.41
COL12A1Q99715 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 LYRM1-202ENST00000396052 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC12.47□□□□□ -0.41
COL12A1Q99715 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 GH1-203ENST00000351388 685 ntTSL 2 BASIC12.47□□□□□ -0.41
COL12A1Q99715 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC12.47□□□□□ -0.41
COL12A1Q99715 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
COL12A1Q99715 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
COL12A1Q99715 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC12.47□□□□□ -0.41
COL12A1Q99715 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC12.47□□□□□ -0.41
COL12A1Q99715 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC12.47□□□□□ -0.41
COL12A1Q99715 AC239600.1-201ENST00000603201 462 ntBASIC12.47□□□□□ -0.41
COL12A1Q99715 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC12.47□□□□□ -0.41
COL12A1Q99715 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC12.47□□□□□ -0.41
COL12A1Q99715 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
COL12A1Q99715 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC12.47□□□□□ -0.41
COL12A1Q99715 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms