Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LMO4P61968 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LMO4P61968 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
LMO4P61968 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
LMO4P61968 KRT17P5-201ENST00000332088 839 ntBASIC11.96□□□□□ -0.49
LMO4P61968 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC11.96□□□□□ -0.49
LMO4P61968 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LMO4P61968 AP000356.3-201ENST00000382243 753 ntBASIC11.96□□□□□ -0.49
LMO4P61968 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC11.96□□□□□ -0.49
LMO4P61968 RPS9P1-201ENST00000419943 583 ntBASIC11.96□□□□□ -0.49
LMO4P61968 AC078991.1-201ENST00000437297 610 ntBASIC11.96□□□□□ -0.49
LMO4P61968 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC11.96□□□□□ -0.49
LMO4P61968 NDUFS6P1-201ENST00000485187 316 ntBASIC11.96□□□□□ -0.49
LMO4P61968 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC11.96□□□□□ -0.49
LMO4P61968 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC11.96□□□□□ -0.49
LMO4P61968 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
LMO4P61968 FOS-204ENST00000554617 796 ntTSL 2 BASIC11.96□□□□□ -0.49
LMO4P61968 AC140658.4-201ENST00000561990 352 ntBASIC11.96□□□□□ -0.49
LMO4P61968 RN7SL555P-201ENST00000584742 339 ntBASIC11.96□□□□□ -0.49
LMO4P61968 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC11.96□□□□□ -0.49
LMO4P61968 AC007326.1-201ENST00000604539 458 ntBASIC11.96□□□□□ -0.49
LMO4P61968 AC005632.3-201ENST00000605544 308 ntBASIC11.96□□□□□ -0.49
LMO4P61968 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC11.96□□□□□ -0.49
LMO4P61968 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LMO4P61968 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
LMO4P61968 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
LMO4P61968 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC11.96□□□□□ -0.5
LMO4P61968 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
LMO4P61968 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC11.96□□□□□ -0.5
LMO4P61968 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
LMO4P61968 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
LMO4P61968 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
LMO4P61968 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.5
LMO4P61968 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
LMO4P61968 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
LMO4P61968 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
LMO4P61968 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC11.96□□□□□ -0.5
LMO4P61968 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC11.96□□□□□ -0.5
LMO4P61968 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC11.96□□□□□ -0.5
LMO4P61968 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
LMO4P61968 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC11.95□□□□□ -0.5
LMO4P61968 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC11.95□□□□□ -0.5
LMO4P61968 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC11.95□□□□□ -0.5
LMO4P61968 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 AC215219.1-201ENST00000400706 1817 ntBASIC11.95□□□□□ -0.5
LMO4P61968 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC11.95□□□□□ -0.5
LMO4P61968 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC11.95□□□□□ -0.5
LMO4P61968 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC11.95□□□□□ -0.5
LMO4P61968 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC11.95□□□□□ -0.5
LMO4P61968 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC11.95□□□□□ -0.5
LMO4P61968 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC11.95□□□□□ -0.5
LMO4P61968 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC11.95□□□□□ -0.5
LMO4P61968 AC092978.1-202ENST00000637590 1327 ntBASIC11.95□□□□□ -0.5
LMO4P61968 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 AGGF1P1-201ENST00000509500 2073 ntBASIC11.95□□□□□ -0.5
LMO4P61968 USP35-204ENST00000530267 2419 ntTSL 2 BASIC11.95□□□□□ -0.5
LMO4P61968 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
LMO4P61968 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC11.95□□□□□ -0.5
LMO4P61968 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC11.95□□□□□ -0.5
LMO4P61968 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 IGF1-203ENST00000392904 761 ntTSL 5 BASIC11.95□□□□□ -0.5
LMO4P61968 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC11.95□□□□□ -0.5
LMO4P61968 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 RN7SL277P-201ENST00000481521 288 ntBASIC11.95□□□□□ -0.5
LMO4P61968 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC11.95□□□□□ -0.5
LMO4P61968 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
LMO4P61968 KRT8P1-201ENST00000557533 1207 ntBASIC11.95□□□□□ -0.5
LMO4P61968 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC11.95□□□□□ -0.5
LMO4P61968 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
LMO4P61968 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC11.95□□□□□ -0.5
LMO4P61968 AC087045.2-201ENST00000606279 1003 ntBASIC11.95□□□□□ -0.5
LMO4P61968 U62317.3-201ENST00000608319 855 ntBASIC11.95□□□□□ -0.5
LMO4P61968 MIR7845-201ENST00000618396 99 ntBASIC11.95□□□□□ -0.5
LMO4P61968 AC242376.2-201ENST00000619355 883 ntBASIC11.95□□□□□ -0.5
LMO4P61968 YRDCP1-201ENST00000621419 643 ntBASIC11.95□□□□□ -0.5
LMO4P61968 AC011491.1-203ENST00000637688 543 ntBASIC11.95□□□□□ -0.5
LMO4P61968 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
LMO4P61968 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC11.95□□□□□ -0.5
LMO4P61968 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC11.95□□□□□ -0.5
LMO4P61968 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC11.95□□□□□ -0.5
LMO4P61968 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms