Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 COX5BP8-201ENST00000416911 349 ntBASIC13.19□□□□□ -0.3
CLRN1P58418 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.19□□□□□ -0.3
CLRN1P58418 FAM8A4P-201ENST00000435433 1213 ntBASIC13.19□□□□□ -0.3
CLRN1P58418 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC13.19□□□□□ -0.3
CLRN1P58418 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC13.19□□□□□ -0.3
CLRN1P58418 AL391280.1-201ENST00000506969 1062 ntBASIC13.19□□□□□ -0.3
CLRN1P58418 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC13.19□□□□□ -0.3
CLRN1P58418 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC13.19□□□□□ -0.3
CLRN1P58418 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.19□□□□□ -0.3
CLRN1P58418 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC13.19□□□□□ -0.3
CLRN1P58418 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC13.19□□□□□ -0.3
CLRN1P58418 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC13.19□□□□□ -0.3
CLRN1P58418 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
CLRN1P58418 OR10B1P-201ENST00000601666 907 ntBASIC13.19□□□□□ -0.3
CLRN1P58418 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.19□□□□□ -0.3
CLRN1P58418 AC138951.2-201ENST00000623455 1161 ntBASIC13.19□□□□□ -0.3
CLRN1P58418 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC13.19□□□□□ -0.3
CLRN1P58418 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.19□□□□□ -0.3
CLRN1P58418 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.19□□□□□ -0.3
CLRN1P58418 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.19□□□□□ -0.3
CLRN1P58418 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
CLRN1P58418 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC13.19□□□□□ -0.3
CLRN1P58418 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC13.19□□□□□ -0.3
CLRN1P58418 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.19□□□□□ -0.3
CLRN1P58418 INE2-201ENST00000630399 1874 ntBASIC13.19□□□□□ -0.3
CLRN1P58418 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.18□□□□□ -0.3
CLRN1P58418 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
CLRN1P58418 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
CLRN1P58418 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC13.18□□□□□ -0.3
CLRN1P58418 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC13.18□□□□□ -0.3
CLRN1P58418 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC13.18□□□□□ -0.3
CLRN1P58418 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC13.18□□□□□ -0.3
CLRN1P58418 NME2P1-201ENST00000426182 414 ntBASIC13.18□□□□□ -0.3
CLRN1P58418 FAM197Y7-201ENST00000432892 766 ntBASIC13.18□□□□□ -0.3
CLRN1P58418 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
CLRN1P58418 AC007551.1-201ENST00000457394 519 ntBASIC13.18□□□□□ -0.3
CLRN1P58418 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
CLRN1P58418 RPL8-205ENST00000527914 551 ntTSL 3 BASIC13.18□□□□□ -0.3
CLRN1P58418 RPL28-206ENST00000558752 671 ntTSL 3 BASIC13.18□□□□□ -0.3
CLRN1P58418 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.18□□□□□ -0.3
CLRN1P58418 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC13.18□□□□□ -0.3
CLRN1P58418 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC13.18□□□□□ -0.3
CLRN1P58418 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC13.18□□□□□ -0.3
CLRN1P58418 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC13.18□□□□□ -0.3
CLRN1P58418 PFAS-212ENST00000625942 396 ntTSL 5 BASIC13.18□□□□□ -0.3
CLRN1P58418 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC13.18□□□□□ -0.3
CLRN1P58418 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CLRN1P58418 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC13.18□□□□□ -0.3
CLRN1P58418 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
CLRN1P58418 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.18□□□□□ -0.3
CLRN1P58418 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC13.18□□□□□ -0.3
CLRN1P58418 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC13.18□□□□□ -0.3
CLRN1P58418 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.18□□□□□ -0.3
CLRN1P58418 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.18□□□□□ -0.3
CLRN1P58418 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLRN1P58418 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
CLRN1P58418 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms