Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.03■□□□□ 0.16
RNF40O75150 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 AC015802.1-201ENST00000588104 1449 ntBASIC16.02■□□□□ 0.16
RNF40O75150 AL122018.1-201ENST00000446607 2310 ntBASIC16.02■□□□□ 0.16
RNF40O75150 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
RNF40O75150 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
RNF40O75150 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
RNF40O75150 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
RNF40O75150 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.02■□□□□ 0.16
RNF40O75150 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC16.02■□□□□ 0.16
RNF40O75150 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
RNF40O75150 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
RNF40O75150 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
RNF40O75150 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC16.02■□□□□ 0.16
RNF40O75150 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC16.02■□□□□ 0.16
RNF40O75150 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.02■□□□□ 0.16
RNF40O75150 PHKG1P2-201ENST00000457537 863 ntBASIC16.02■□□□□ 0.16
RNF40O75150 FTH1P14-201ENST00000482930 551 ntBASIC16.02■□□□□ 0.16
RNF40O75150 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC16.02■□□□□ 0.16
RNF40O75150 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC16.02■□□□□ 0.16
RNF40O75150 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC16.02■□□□□ 0.16
RNF40O75150 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC16.02■□□□□ 0.16
RNF40O75150 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16.02■□□□□ 0.16
RNF40O75150 AC009486.1-201ENST00000569860 813 ntBASIC16.02■□□□□ 0.16
RNF40O75150 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
RNF40O75150 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC16.02■□□□□ 0.16
RNF40O75150 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
RNF40O75150 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
RNF40O75150 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
RNF40O75150 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
RNF40O75150 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
RNF40O75150 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.02■□□□□ 0.15
RNF40O75150 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
RNF40O75150 MSTO2P-201ENST00000314835 1709 ntBASIC16.02■□□□□ 0.15
RNF40O75150 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
RNF40O75150 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
RNF40O75150 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
RNF40O75150 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
RNF40O75150 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF40O75150 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC16.01■□□□□ 0.15
RNF40O75150 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF40O75150 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF40O75150 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF40O75150 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
RNF40O75150 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC16.01■□□□□ 0.15
RNF40O75150 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF40O75150 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.01■□□□□ 0.15
RNF40O75150 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 AC092933.1-201ENST00000393644 945 ntBASIC16.01■□□□□ 0.15
RNF40O75150 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC16.01■□□□□ 0.15
RNF40O75150 BAATP1-201ENST00000412284 1225 ntBASIC16.01■□□□□ 0.15
RNF40O75150 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC16.01■□□□□ 0.15
RNF40O75150 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC16.01■□□□□ 0.15
RNF40O75150 AP000812.2-201ENST00000538934 718 ntBASIC16.01■□□□□ 0.15
RNF40O75150 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC16.01■□□□□ 0.15
RNF40O75150 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC16.01■□□□□ 0.15
RNF40O75150 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF40O75150 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
RNF40O75150 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
RNF40O75150 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
RNF40O75150 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
RNF40O75150 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.01■□□□□ 0.15
RNF40O75150 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
RNF40O75150 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC16.01■□□□□ 0.15
RNF40O75150 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
RNF40O75150 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
RNF40O75150 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF40O75150 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
RNF40O75150 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF40O75150 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.01■□□□□ 0.15
RNF40O75150 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF40O75150 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.01■□□□□ 0.15
RNF40O75150 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
RNF40O75150 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
RNF40O75150 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
RNF40O75150 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF40O75150 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC16■□□□□ 0.15
RNF40O75150 AC134312.5-201ENST00000568031 1313 ntBASIC16■□□□□ 0.15
RNF40O75150 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms