Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 GNAQP1-201ENST00000444815 1067 ntBASIC12.6□□□□□ -0.39
SDCBPO00560 TMPRSS11CP-201ENST00000453277 683 ntBASIC12.6□□□□□ -0.39
SDCBPO00560 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC12.6□□□□□ -0.39
SDCBPO00560 CD81-207ENST00000481687 890 ntTSL 2 BASIC12.6□□□□□ -0.39
SDCBPO00560 AC093004.1-201ENST00000508850 424 ntBASIC12.6□□□□□ -0.39
SDCBPO00560 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC12.6□□□□□ -0.39
SDCBPO00560 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC12.6□□□□□ -0.39
SDCBPO00560 AC055876.2-201ENST00000531834 546 ntBASIC12.6□□□□□ -0.39
SDCBPO00560 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC12.6□□□□□ -0.39
SDCBPO00560 RRP7BP-205ENST00000566851 833 ntBASIC12.6□□□□□ -0.39
SDCBPO00560 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
SDCBPO00560 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC12.6□□□□□ -0.39
SDCBPO00560 AC004790.1-201ENST00000612686 536 ntBASIC12.6□□□□□ -0.39
SDCBPO00560 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
SDCBPO00560 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC12.6□□□□□ -0.39
SDCBPO00560 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC12.6□□□□□ -0.39
SDCBPO00560 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 DRD5P1-201ENST00000456605 1438 ntBASIC12.6□□□□□ -0.39
SDCBPO00560 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
SDCBPO00560 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC12.6□□□□□ -0.39
SDCBPO00560 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
SDCBPO00560 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC12.6□□□□□ -0.39
SDCBPO00560 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC12.6□□□□□ -0.39
SDCBPO00560 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC12.6□□□□□ -0.39
SDCBPO00560 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
SDCBPO00560 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC12.59□□□□□ -0.39
SDCBPO00560 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC12.59□□□□□ -0.39
SDCBPO00560 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 AL138799.1-201ENST00000448213 1675 ntBASIC12.59□□□□□ -0.39
SDCBPO00560 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC12.59□□□□□ -0.39
SDCBPO00560 HLA-K-203ENST00000430151 1046 ntBASIC12.59□□□□□ -0.39
SDCBPO00560 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC12.59□□□□□ -0.39
SDCBPO00560 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC12.59□□□□□ -0.39
SDCBPO00560 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC12.59□□□□□ -0.39
SDCBPO00560 GAPDHP40-201ENST00000505218 1006 ntBASIC12.59□□□□□ -0.39
SDCBPO00560 AC026410.3-201ENST00000514280 936 ntBASIC12.59□□□□□ -0.39
SDCBPO00560 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC12.59□□□□□ -0.39
SDCBPO00560 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC12.59□□□□□ -0.39
SDCBPO00560 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC12.59□□□□□ -0.39
SDCBPO00560 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC12.59□□□□□ -0.39
SDCBPO00560 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 AC099521.3-201ENST00000624251 2938 ntBASIC12.59□□□□□ -0.39
SDCBPO00560 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
SDCBPO00560 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
SDCBPO00560 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC12.59□□□□□ -0.39
SDCBPO00560 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC12.59□□□□□ -0.39
SDCBPO00560 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
SDCBPO00560 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 KRT8P24-201ENST00000560290 1559 ntBASIC12.59□□□□□ -0.39
SDCBPO00560 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC12.59□□□□□ -0.39
SDCBPO00560 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC12.59□□□□□ -0.39
SDCBPO00560 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SDCBPO00560 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC12.59□□□□□ -0.39
SDCBPO00560 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC12.59□□□□□ -0.39
SDCBPO00560 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.39
SDCBPO00560 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.39
SDCBPO00560 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.39
SDCBPO00560 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
SDCBPO00560 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC12.58□□□□□ -0.39
SDCBPO00560 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC12.58□□□□□ -0.4
SDCBPO00560 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.4
SDCBPO00560 GALC-206ENST00000544807 2528 ntTSL 2 BASIC12.58□□□□□ -0.4
SDCBPO00560 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
SDCBPO00560 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.4
SDCBPO00560 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms