Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PCDHGA4Q9Y5G9 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
PCDHGA4Q9Y5G9 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PCDHGA4Q9Y5G9 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC22.33■■□□□ 1.17
PCDHGA4Q9Y5G9 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.17
PCDHGA4Q9Y5G9 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PCDHGA4Q9Y5G9 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
PCDHGA4Q9Y5G9 MIR6724-1-201ENST00000616420 92 ntBASIC22.33■■□□□ 1.17
PCDHGA4Q9Y5G9 MIR6724-2-201ENST00000616483 92 ntBASIC22.33■■□□□ 1.17
PCDHGA4Q9Y5G9 MIR6724-4-201ENST00000617390 92 ntBASIC22.33■■□□□ 1.17
PCDHGA4Q9Y5G9 MIR6724-3-201ENST00000622482 92 ntBASIC22.33■■□□□ 1.17
PCDHGA4Q9Y5G9 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
PCDHGA4Q9Y5G9 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
PCDHGA4Q9Y5G9 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
PCDHGA4Q9Y5G9 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
PCDHGA4Q9Y5G9 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.16
PCDHGA4Q9Y5G9 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PCDHGA4Q9Y5G9 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
PCDHGA4Q9Y5G9 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC22.32■■□□□ 1.16
PCDHGA4Q9Y5G9 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC22.32■■□□□ 1.16
PCDHGA4Q9Y5G9 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PCDHGA4Q9Y5G9 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PCDHGA4Q9Y5G9 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC22.32■■□□□ 1.16
PCDHGA4Q9Y5G9 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PCDHGA4Q9Y5G9 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC22.31■■□□□ 1.16
PCDHGA4Q9Y5G9 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.31■■□□□ 1.16
PCDHGA4Q9Y5G9 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHGA4Q9Y5G9 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHGA4Q9Y5G9 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC22.31■■□□□ 1.16
PCDHGA4Q9Y5G9 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC22.31■■□□□ 1.16
PCDHGA4Q9Y5G9 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PCDHGA4Q9Y5G9 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PCDHGA4Q9Y5G9 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
PCDHGA4Q9Y5G9 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC22.3■■□□□ 1.16
PCDHGA4Q9Y5G9 AC096631.2-201ENST00000436136 790 ntBASIC22.3■■□□□ 1.16
PCDHGA4Q9Y5G9 AL356740.2-201ENST00000601559 647 ntBASIC22.3■■□□□ 1.16
PCDHGA4Q9Y5G9 AC005837.3-201ENST00000612163 286 ntBASIC22.3■■□□□ 1.16
PCDHGA4Q9Y5G9 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PCDHGA4Q9Y5G9 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
PCDHGA4Q9Y5G9 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PCDHGA4Q9Y5G9 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
PCDHGA4Q9Y5G9 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
PCDHGA4Q9Y5G9 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC22.29■■□□□ 1.16
PCDHGA4Q9Y5G9 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
PCDHGA4Q9Y5G9 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
PCDHGA4Q9Y5G9 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC22.29■■□□□ 1.16
PCDHGA4Q9Y5G9 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
PCDHGA4Q9Y5G9 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC22.29■■□□□ 1.16
PCDHGA4Q9Y5G9 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
PCDHGA4Q9Y5G9 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHGA4Q9Y5G9 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHGA4Q9Y5G9 LSM4-201ENST00000252816 986 ntTSL 2 BASIC22.28■■□□□ 1.16
PCDHGA4Q9Y5G9 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHGA4Q9Y5G9 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.28■■□□□ 1.16
PCDHGA4Q9Y5G9 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC22.27■■□□□ 1.16
PCDHGA4Q9Y5G9 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PCDHGA4Q9Y5G9 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PCDHGA4Q9Y5G9 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
PCDHGA4Q9Y5G9 MIR4466-201ENST00000606121 54 ntBASIC22.27■■□□□ 1.16
PCDHGA4Q9Y5G9 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
PCDHGA4Q9Y5G9 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PCDHGA4Q9Y5G9 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PCDHGA4Q9Y5G9 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
PCDHGA4Q9Y5G9 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC22.27■■□□□ 1.16
PCDHGA4Q9Y5G9 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHGA4Q9Y5G9 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHGA4Q9Y5G9 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHGA4Q9Y5G9 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHGA4Q9Y5G9 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHGA4Q9Y5G9 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC22.26■■□□□ 1.15
PCDHGA4Q9Y5G9 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHGA4Q9Y5G9 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHGA4Q9Y5G9 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC22.26■■□□□ 1.15
PCDHGA4Q9Y5G9 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHGA4Q9Y5G9 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHGA4Q9Y5G9 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHGA4Q9Y5G9 SENP5-202ENST00000419026 973 ntTSL 3 BASIC22.25■■□□□ 1.15
PCDHGA4Q9Y5G9 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDHGA4Q9Y5G9 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
PCDHGA4Q9Y5G9 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC22.25■■□□□ 1.15
PCDHGA4Q9Y5G9 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC22.24■■□□□ 1.15
PCDHGA4Q9Y5G9 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC22.24■■□□□ 1.15
PCDHGA4Q9Y5G9 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC22.24■■□□□ 1.15
PCDHGA4Q9Y5G9 EXOG-217ENST00000630638 197 ntTSL 5 BASIC22.24■■□□□ 1.15
PCDHGA4Q9Y5G9 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
PCDHGA4Q9Y5G9 HLA-L-211ENST00000482052 1765 ntBASIC22.24■■□□□ 1.15
PCDHGA4Q9Y5G9 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCDHGA4Q9Y5G9 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCDHGA4Q9Y5G9 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC22.24■■□□□ 1.15
PCDHGA4Q9Y5G9 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCDHGA4Q9Y5G9 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCDHGA4Q9Y5G9 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHGA4Q9Y5G9 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHGA4Q9Y5G9 EED-207ENST00000528180 1745 ntTSL 5 BASIC22.23■■□□□ 1.15
PCDHGA4Q9Y5G9 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHGA4Q9Y5G9 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC22.23■■□□□ 1.15
PCDHGA4Q9Y5G9 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC22.23■■□□□ 1.15
PCDHGA4Q9Y5G9 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC22.23■■□□□ 1.15
PCDHGA4Q9Y5G9 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
PCDHGA4Q9Y5G9 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms