Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC22.79■■□□□ 1.24
TM9SF3Q9HD45 AC026271.2-201ENST00000428091 497 ntBASIC22.79■■□□□ 1.24
TM9SF3Q9HD45 STK32C-205ENST00000456004 607 ntTSL 2 BASIC22.79■■□□□ 1.24
TM9SF3Q9HD45 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC22.79■■□□□ 1.24
TM9SF3Q9HD45 AF213884.3-201ENST00000563833 479 ntBASIC22.79■■□□□ 1.24
TM9SF3Q9HD45 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC22.79■■□□□ 1.24
TM9SF3Q9HD45 SF1-220ENST00000626028 704 ntTSL 2 BASIC22.79■■□□□ 1.24
TM9SF3Q9HD45 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
TM9SF3Q9HD45 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC22.79■■□□□ 1.24
TM9SF3Q9HD45 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
TM9SF3Q9HD45 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
TM9SF3Q9HD45 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
TM9SF3Q9HD45 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
TM9SF3Q9HD45 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC22.78■■□□□ 1.24
TM9SF3Q9HD45 AC105265.2-201ENST00000467189 838 ntBASIC22.78■■□□□ 1.24
TM9SF3Q9HD45 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
TM9SF3Q9HD45 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC22.78■■□□□ 1.24
TM9SF3Q9HD45 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC22.78■■□□□ 1.24
TM9SF3Q9HD45 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.78■■□□□ 1.24
TM9SF3Q9HD45 SYT6-210ENST00000641643 1587 ntBASIC22.77■■□□□ 1.24
TM9SF3Q9HD45 SLC6A10P-202ENST00000431994 2058 ntBASIC22.77■■□□□ 1.24
TM9SF3Q9HD45 MIR939-201ENST00000401314 82 ntBASIC22.77■■□□□ 1.24
TM9SF3Q9HD45 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
TM9SF3Q9HD45 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC22.77■■□□□ 1.24
TM9SF3Q9HD45 AC092171.4-201ENST00000609130 632 ntBASIC22.77■■□□□ 1.24
TM9SF3Q9HD45 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC22.77■■□□□ 1.24
TM9SF3Q9HD45 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
TM9SF3Q9HD45 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
TM9SF3Q9HD45 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.77■■□□□ 1.23
TM9SF3Q9HD45 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
TM9SF3Q9HD45 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
TM9SF3Q9HD45 AP001330.3-201ENST00000520123 633 ntBASIC22.76■■□□□ 1.23
TM9SF3Q9HD45 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC22.76■■□□□ 1.23
TM9SF3Q9HD45 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
TM9SF3Q9HD45 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
TM9SF3Q9HD45 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
TM9SF3Q9HD45 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
TM9SF3Q9HD45 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC22.75■■□□□ 1.23
TM9SF3Q9HD45 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
TM9SF3Q9HD45 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
TM9SF3Q9HD45 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
TM9SF3Q9HD45 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC22.75■■□□□ 1.23
TM9SF3Q9HD45 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
TM9SF3Q9HD45 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
TM9SF3Q9HD45 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC22.74■■□□□ 1.23
TM9SF3Q9HD45 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC22.74■■□□□ 1.23
TM9SF3Q9HD45 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC22.74■■□□□ 1.23
TM9SF3Q9HD45 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
TM9SF3Q9HD45 MIR4767-201ENST00000582827 78 ntBASIC22.74■■□□□ 1.23
TM9SF3Q9HD45 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC22.74■■□□□ 1.23
TM9SF3Q9HD45 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC22.74■■□□□ 1.23
TM9SF3Q9HD45 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC22.74■■□□□ 1.23
TM9SF3Q9HD45 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
TM9SF3Q9HD45 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
TM9SF3Q9HD45 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
TM9SF3Q9HD45 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
TM9SF3Q9HD45 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
TM9SF3Q9HD45 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC22.73■■□□□ 1.23
TM9SF3Q9HD45 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22.73■■□□□ 1.23
TM9SF3Q9HD45 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC22.73■■□□□ 1.23
TM9SF3Q9HD45 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC22.73■■□□□ 1.23
TM9SF3Q9HD45 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC22.73■■□□□ 1.23
TM9SF3Q9HD45 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
TM9SF3Q9HD45 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC22.73■■□□□ 1.23
TM9SF3Q9HD45 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
TM9SF3Q9HD45 SERBP1P1-201ENST00000396021 1160 ntBASIC22.72■■□□□ 1.23
TM9SF3Q9HD45 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
TM9SF3Q9HD45 AC099791.2-201ENST00000605725 427 ntBASIC22.72■■□□□ 1.23
TM9SF3Q9HD45 AC092666.2-201ENST00000613287 246 ntBASIC22.72■■□□□ 1.23
TM9SF3Q9HD45 MIR6089-201ENST00000616698 64 ntBASIC22.72■■□□□ 1.23
TM9SF3Q9HD45 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
TM9SF3Q9HD45 PTMA-205ENST00000410064 814 ntTSL 2 BASIC22.71■■□□□ 1.23
TM9SF3Q9HD45 AC091305.1-201ENST00000479476 895 ntBASIC22.71■■□□□ 1.23
TM9SF3Q9HD45 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC22.71■■□□□ 1.23
TM9SF3Q9HD45 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC22.71■■□□□ 1.23
TM9SF3Q9HD45 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
TM9SF3Q9HD45 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC22.71■■□□□ 1.23
TM9SF3Q9HD45 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC22.71■■□□□ 1.23
TM9SF3Q9HD45 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
TM9SF3Q9HD45 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
TM9SF3Q9HD45 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC22.7■■□□□ 1.23
TM9SF3Q9HD45 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.7■■□□□ 1.22
TM9SF3Q9HD45 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
TM9SF3Q9HD45 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
TM9SF3Q9HD45 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC22.7■■□□□ 1.22
TM9SF3Q9HD45 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
TM9SF3Q9HD45 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC22.7■■□□□ 1.22
TM9SF3Q9HD45 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
TM9SF3Q9HD45 AL022069.1-201ENST00000568025 1636 ntBASIC22.7■■□□□ 1.22
TM9SF3Q9HD45 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
TM9SF3Q9HD45 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
TM9SF3Q9HD45 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.69■■□□□ 1.22
TM9SF3Q9HD45 AC009102.2-201ENST00000606772 1639 ntBASIC22.69■■□□□ 1.22
TM9SF3Q9HD45 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
TM9SF3Q9HD45 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC22.69■■□□□ 1.22
TM9SF3Q9HD45 STOX2-205ENST00000513034 807 ntTSL 3 BASIC22.69■■□□□ 1.22
TM9SF3Q9HD45 MIR5787-201ENST00000611784 55 ntBASIC22.69■■□□□ 1.22
TM9SF3Q9HD45 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
TM9SF3Q9HD45 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
TM9SF3Q9HD45 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC22.68■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms