Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
USP48Q86UV5 DUX4L19-201ENST00000557448 1267 ntBASIC27.89■■■□□ 2.06
USP48Q86UV5 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC27.89■■■□□ 2.06
USP48Q86UV5 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC27.89■■■□□ 2.05
USP48Q86UV5 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC27.88■■■□□ 2.05
USP48Q86UV5 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
USP48Q86UV5 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
USP48Q86UV5 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC27.88■■■□□ 2.05
USP48Q86UV5 AC090877.2-201ENST00000558441 1738 ntBASIC27.88■■■□□ 2.05
USP48Q86UV5 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC27.88■■■□□ 2.05
USP48Q86UV5 MIR4767-201ENST00000582827 78 ntBASIC27.88■■■□□ 2.05
USP48Q86UV5 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC27.88■■■□□ 2.05
USP48Q86UV5 CA15P2-201ENST00000611168 834 ntBASIC27.88■■■□□ 2.05
USP48Q86UV5 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
USP48Q86UV5 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
USP48Q86UV5 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
USP48Q86UV5 LBH-205ENST00000407930 756 ntTSL 2 BASIC27.87■■■□□ 2.05
USP48Q86UV5 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC27.87■■■□□ 2.05
USP48Q86UV5 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
USP48Q86UV5 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC27.86■■■□□ 2.05
USP48Q86UV5 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC27.86■■■□□ 2.05
USP48Q86UV5 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
USP48Q86UV5 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC27.86■■■□□ 2.05
USP48Q86UV5 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC27.86■■■□□ 2.05
USP48Q86UV5 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC27.86■■■□□ 2.05
USP48Q86UV5 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC27.86■■■□□ 2.05
USP48Q86UV5 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC27.85■■■□□ 2.05
USP48Q86UV5 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC27.85■■■□□ 2.05
USP48Q86UV5 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC27.85■■■□□ 2.05
USP48Q86UV5 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC27.85■■■□□ 2.05
USP48Q86UV5 SF1-220ENST00000626028 704 ntTSL 2 BASIC27.85■■■□□ 2.05
USP48Q86UV5 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
USP48Q86UV5 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC27.84■■■□□ 2.05
USP48Q86UV5 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC27.84■■■□□ 2.05
USP48Q86UV5 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC27.84■■■□□ 2.05
USP48Q86UV5 SYT6-210ENST00000641643 1587 ntBASIC27.84■■■□□ 2.05
USP48Q86UV5 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
USP48Q86UV5 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
USP48Q86UV5 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
USP48Q86UV5 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
USP48Q86UV5 RASA4CP-201ENST00000424092 1398 ntBASIC27.83■■■□□ 2.05
USP48Q86UV5 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC27.83■■■□□ 2.05
USP48Q86UV5 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
USP48Q86UV5 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC27.83■■■□□ 2.04
USP48Q86UV5 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
USP48Q86UV5 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
USP48Q86UV5 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
USP48Q86UV5 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC27.82■■■□□ 2.04
USP48Q86UV5 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC27.82■■■□□ 2.04
USP48Q86UV5 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
USP48Q86UV5 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
USP48Q86UV5 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
USP48Q86UV5 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC27.81■■■□□ 2.04
USP48Q86UV5 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
USP48Q86UV5 PTMA-205ENST00000410064 814 ntTSL 2 BASIC27.81■■■□□ 2.04
USP48Q86UV5 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC27.81■■■□□ 2.04
USP48Q86UV5 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC27.81■■■□□ 2.04
USP48Q86UV5 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
USP48Q86UV5 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC27.8■■■□□ 2.04
USP48Q86UV5 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC27.8■■■□□ 2.04
USP48Q86UV5 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC27.8■■■□□ 2.04
USP48Q86UV5 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
USP48Q86UV5 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
USP48Q86UV5 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC27.8■■■□□ 2.04
USP48Q86UV5 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
USP48Q86UV5 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
USP48Q86UV5 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
USP48Q86UV5 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC27.79■■■□□ 2.04
USP48Q86UV5 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC27.79■■■□□ 2.04
USP48Q86UV5 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
USP48Q86UV5 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC27.79■■■□□ 2.04
USP48Q86UV5 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC27.79■■■□□ 2.04
USP48Q86UV5 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC27.79■■■□□ 2.04
USP48Q86UV5 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC27.79■■■□□ 2.04
USP48Q86UV5 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC27.78■■■□□ 2.04
USP48Q86UV5 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
USP48Q86UV5 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC27.78■■■□□ 2.04
USP48Q86UV5 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
USP48Q86UV5 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC27.78■■■□□ 2.04
USP48Q86UV5 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
USP48Q86UV5 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
USP48Q86UV5 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC27.78■■■□□ 2.04
USP48Q86UV5 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC27.78■■■□□ 2.04
USP48Q86UV5 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC27.77■■■□□ 2.04
USP48Q86UV5 IRS3P-201ENST00000223076 1006 ntBASIC27.77■■■□□ 2.04
USP48Q86UV5 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
USP48Q86UV5 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
USP48Q86UV5 AC090192.1-201ENST00000517740 490 ntBASIC27.77■■■□□ 2.04
USP48Q86UV5 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC27.77■■■□□ 2.04
USP48Q86UV5 TMEM202-AS1-202ENST00000565181 2325 ntBASIC27.76■■■□□ 2.04
USP48Q86UV5 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC27.76■■■□□ 2.04
USP48Q86UV5 LTK-203ENST00000453182 2412 ntTSL 2 BASIC27.76■■■□□ 2.03
USP48Q86UV5 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
USP48Q86UV5 SERBP1P1-201ENST00000396021 1160 ntBASIC27.76■■■□□ 2.03
USP48Q86UV5 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC27.76■■■□□ 2.03
USP48Q86UV5 AC008764.7-201ENST00000593779 1081 ntBASIC27.76■■■□□ 2.03
USP48Q86UV5 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC27.76■■■□□ 2.03
USP48Q86UV5 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
USP48Q86UV5 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC27.76■■■□□ 2.03
USP48Q86UV5 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms