Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 C17orf82-201ENST00000623772 1530 ntBASIC20.64■□□□□ 0.9
RNFT1Q5M7Z0 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
RNFT1Q5M7Z0 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
RNFT1Q5M7Z0 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
RNFT1Q5M7Z0 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.64■□□□□ 0.89
RNFT1Q5M7Z0 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
RNFT1Q5M7Z0 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.64■□□□□ 0.89
RNFT1Q5M7Z0 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.64■□□□□ 0.89
RNFT1Q5M7Z0 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.64■□□□□ 0.89
RNFT1Q5M7Z0 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RNFT1Q5M7Z0 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.64■□□□□ 0.89
RNFT1Q5M7Z0 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RNFT1Q5M7Z0 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNFT1Q5M7Z0 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RNFT1Q5M7Z0 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNFT1Q5M7Z0 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.63■□□□□ 0.89
RNFT1Q5M7Z0 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNFT1Q5M7Z0 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNFT1Q5M7Z0 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
RNFT1Q5M7Z0 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNFT1Q5M7Z0 AF213884.3-201ENST00000563833 479 ntBASIC20.63■□□□□ 0.89
RNFT1Q5M7Z0 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.63■□□□□ 0.89
RNFT1Q5M7Z0 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.63■□□□□ 0.89
RNFT1Q5M7Z0 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNFT1Q5M7Z0 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RNFT1Q5M7Z0 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RNFT1Q5M7Z0 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.62■□□□□ 0.89
RNFT1Q5M7Z0 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RNFT1Q5M7Z0 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.62■□□□□ 0.89
RNFT1Q5M7Z0 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.62■□□□□ 0.89
RNFT1Q5M7Z0 MIR4767-201ENST00000582827 78 ntBASIC20.62■□□□□ 0.89
RNFT1Q5M7Z0 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
RNFT1Q5M7Z0 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RNFT1Q5M7Z0 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
RNFT1Q5M7Z0 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RNFT1Q5M7Z0 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RNFT1Q5M7Z0 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RNFT1Q5M7Z0 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.61■□□□□ 0.89
RNFT1Q5M7Z0 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RNFT1Q5M7Z0 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RNFT1Q5M7Z0 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RNFT1Q5M7Z0 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.61■□□□□ 0.89
RNFT1Q5M7Z0 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.61■□□□□ 0.89
RNFT1Q5M7Z0 AP001330.3-201ENST00000520123 633 ntBASIC20.61■□□□□ 0.89
RNFT1Q5M7Z0 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.61■□□□□ 0.89
RNFT1Q5M7Z0 AC092171.4-201ENST00000609130 632 ntBASIC20.61■□□□□ 0.89
RNFT1Q5M7Z0 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.61■□□□□ 0.89
RNFT1Q5M7Z0 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
RNFT1Q5M7Z0 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.61■□□□□ 0.89
RNFT1Q5M7Z0 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
RNFT1Q5M7Z0 AL161729.1-201ENST00000604104 1402 ntBASIC20.61■□□□□ 0.89
RNFT1Q5M7Z0 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RNFT1Q5M7Z0 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RNFT1Q5M7Z0 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.6■□□□□ 0.89
RNFT1Q5M7Z0 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
RNFT1Q5M7Z0 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RNFT1Q5M7Z0 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RNFT1Q5M7Z0 MIR939-201ENST00000401314 82 ntBASIC20.6■□□□□ 0.89
RNFT1Q5M7Z0 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
RNFT1Q5M7Z0 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RNFT1Q5M7Z0 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RNFT1Q5M7Z0 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNFT1Q5M7Z0 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNFT1Q5M7Z0 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RNFT1Q5M7Z0 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNFT1Q5M7Z0 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNFT1Q5M7Z0 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RNFT1Q5M7Z0 AC006455.2-201ENST00000429931 906 ntBASIC20.59■□□□□ 0.89
RNFT1Q5M7Z0 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RNFT1Q5M7Z0 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RNFT1Q5M7Z0 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNFT1Q5M7Z0 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.59■□□□□ 0.89
RNFT1Q5M7Z0 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNFT1Q5M7Z0 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.59■□□□□ 0.89
RNFT1Q5M7Z0 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RNFT1Q5M7Z0 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNFT1Q5M7Z0 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNFT1Q5M7Z0 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNFT1Q5M7Z0 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.58■□□□□ 0.89
RNFT1Q5M7Z0 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC20.58■□□□□ 0.89
RNFT1Q5M7Z0 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
RNFT1Q5M7Z0 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNFT1Q5M7Z0 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
RNFT1Q5M7Z0 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RNFT1Q5M7Z0 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.57■□□□□ 0.88
RNFT1Q5M7Z0 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
RNFT1Q5M7Z0 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
RNFT1Q5M7Z0 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.57■□□□□ 0.88
RNFT1Q5M7Z0 AC105265.2-201ENST00000467189 838 ntBASIC20.57■□□□□ 0.88
RNFT1Q5M7Z0 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.57■□□□□ 0.88
RNFT1Q5M7Z0 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.57■□□□□ 0.88
RNFT1Q5M7Z0 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
RNFT1Q5M7Z0 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
RNFT1Q5M7Z0 ALDH1A3-203ENST00000557963 1670 ntBASIC20.57■□□□□ 0.88
RNFT1Q5M7Z0 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RNFT1Q5M7Z0 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNFT1Q5M7Z0 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.57■□□□□ 0.88
RNFT1Q5M7Z0 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNFT1Q5M7Z0 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNFT1Q5M7Z0 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms