Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC40Q4G0X9 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC40Q4G0X9 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC25.01■■□□□ 1.59
CCDC40Q4G0X9 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC40Q4G0X9 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
CCDC40Q4G0X9 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC40Q4G0X9 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
CCDC40Q4G0X9 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC40Q4G0X9 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC25■■□□□ 1.59
CCDC40Q4G0X9 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC25■■□□□ 1.59
CCDC40Q4G0X9 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC40Q4G0X9 AC103834.1-201ENST00000520383 144 ntBASIC25■■□□□ 1.59
CCDC40Q4G0X9 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC25■■□□□ 1.59
CCDC40Q4G0X9 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC40Q4G0X9 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC25■■□□□ 1.59
CCDC40Q4G0X9 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC25■■□□□ 1.59
CCDC40Q4G0X9 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC40Q4G0X9 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC25■■□□□ 1.59
CCDC40Q4G0X9 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC40Q4G0X9 YBX1P4-201ENST00000392794 808 ntBASIC24.99■■□□□ 1.59
CCDC40Q4G0X9 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC24.99■■□□□ 1.59
CCDC40Q4G0X9 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC40Q4G0X9 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC40Q4G0X9 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC24.98■■□□□ 1.59
CCDC40Q4G0X9 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC40Q4G0X9 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC24.98■■□□□ 1.59
CCDC40Q4G0X9 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC40Q4G0X9 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC40Q4G0X9 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC24.98■■□□□ 1.59
CCDC40Q4G0X9 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
CCDC40Q4G0X9 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC40Q4G0X9 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC40Q4G0X9 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC24.97■■□□□ 1.59
CCDC40Q4G0X9 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC24.97■■□□□ 1.59
CCDC40Q4G0X9 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC40Q4G0X9 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC40Q4G0X9 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC40Q4G0X9 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC40Q4G0X9 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC40Q4G0X9 ALDH1A3-203ENST00000557963 1670 ntBASIC24.97■■□□□ 1.59
CCDC40Q4G0X9 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC40Q4G0X9 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC24.96■■□□□ 1.59
CCDC40Q4G0X9 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC24.96■■□□□ 1.59
CCDC40Q4G0X9 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC24.96■■□□□ 1.59
CCDC40Q4G0X9 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC40Q4G0X9 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC40Q4G0X9 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC40Q4G0X9 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC24.96■■□□□ 1.59
CCDC40Q4G0X9 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC24.96■■□□□ 1.59
CCDC40Q4G0X9 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC40Q4G0X9 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC40Q4G0X9 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.59
CCDC40Q4G0X9 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC24.95■■□□□ 1.58
CCDC40Q4G0X9 EI24-204ENST00000527235 1625 ntTSL 5 BASIC24.95■■□□□ 1.58
CCDC40Q4G0X9 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC40Q4G0X9 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC40Q4G0X9 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC40Q4G0X9 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC24.95■■□□□ 1.58
CCDC40Q4G0X9 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC40Q4G0X9 NFE2L3P1-201ENST00000588207 1959 ntBASIC24.94■■□□□ 1.58
CCDC40Q4G0X9 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC40Q4G0X9 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC24.94■■□□□ 1.58
CCDC40Q4G0X9 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC24.94■■□□□ 1.58
CCDC40Q4G0X9 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
CCDC40Q4G0X9 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
CCDC40Q4G0X9 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC24.94■■□□□ 1.58
CCDC40Q4G0X9 AC103724.3-201ENST00000564481 992 ntBASIC24.94■■□□□ 1.58
CCDC40Q4G0X9 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
CCDC40Q4G0X9 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC40Q4G0X9 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC40Q4G0X9 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC24.94■■□□□ 1.58
CCDC40Q4G0X9 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC24.93■■□□□ 1.58
CCDC40Q4G0X9 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC40Q4G0X9 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC40Q4G0X9 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC40Q4G0X9 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC40Q4G0X9 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC40Q4G0X9 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC40Q4G0X9 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC40Q4G0X9 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC24.92■■□□□ 1.58
CCDC40Q4G0X9 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC24.92■■□□□ 1.58
CCDC40Q4G0X9 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC40Q4G0X9 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC40Q4G0X9 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC24.92■■□□□ 1.58
CCDC40Q4G0X9 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC24.92■■□□□ 1.58
CCDC40Q4G0X9 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC40Q4G0X9 ANOS2P-203ENST00000472227 1816 ntBASIC24.91■■□□□ 1.58
CCDC40Q4G0X9 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC24.91■■□□□ 1.58
CCDC40Q4G0X9 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC24.91■■□□□ 1.58
CCDC40Q4G0X9 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC40Q4G0X9 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC24.91■■□□□ 1.58
CCDC40Q4G0X9 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC40Q4G0X9 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC40Q4G0X9 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC40Q4G0X9 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC24.91■■□□□ 1.58
CCDC40Q4G0X9 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC24.91■■□□□ 1.58
CCDC40Q4G0X9 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC24.91■■□□□ 1.58
CCDC40Q4G0X9 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CCDC40Q4G0X9 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CCDC40Q4G0X9 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC24.9■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms