Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.13■□□□□ 0.97
RFX4Q33E94 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
RFX4Q33E94 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.13■□□□□ 0.97
RFX4Q33E94 GPX1-201ENST00000419349 1106 ntBASIC21.13■□□□□ 0.97
RFX4Q33E94 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.13■□□□□ 0.97
RFX4Q33E94 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
RFX4Q33E94 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
RFX4Q33E94 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RFX4Q33E94 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RFX4Q33E94 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
RFX4Q33E94 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RFX4Q33E94 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RFX4Q33E94 MIR4449-201ENST00000578365 66 ntBASIC21.12■□□□□ 0.97
RFX4Q33E94 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
RFX4Q33E94 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RFX4Q33E94 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RFX4Q33E94 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.12■□□□□ 0.97
RFX4Q33E94 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.12■□□□□ 0.97
RFX4Q33E94 PKD1P6-201ENST00000343738 4769 ntBASIC21.12■□□□□ 0.97
RFX4Q33E94 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
RFX4Q33E94 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
RFX4Q33E94 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFX4Q33E94 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
RFX4Q33E94 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.11■□□□□ 0.97
RFX4Q33E94 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RFX4Q33E94 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFX4Q33E94 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFX4Q33E94 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RFX4Q33E94 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
RFX4Q33E94 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFX4Q33E94 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFX4Q33E94 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RFX4Q33E94 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RFX4Q33E94 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RFX4Q33E94 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RFX4Q33E94 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RFX4Q33E94 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.1■□□□□ 0.97
RFX4Q33E94 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RFX4Q33E94 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.1■□□□□ 0.97
RFX4Q33E94 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RFX4Q33E94 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RFX4Q33E94 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RFX4Q33E94 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RFX4Q33E94 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RFX4Q33E94 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.09■□□□□ 0.97
RFX4Q33E94 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RFX4Q33E94 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RFX4Q33E94 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.09■□□□□ 0.97
RFX4Q33E94 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RFX4Q33E94 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.09■□□□□ 0.97
RFX4Q33E94 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RFX4Q33E94 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RFX4Q33E94 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RFX4Q33E94 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
RFX4Q33E94 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RFX4Q33E94 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
RFX4Q33E94 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.08■□□□□ 0.97
RFX4Q33E94 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
RFX4Q33E94 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.08■□□□□ 0.97
RFX4Q33E94 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.07■□□□□ 0.96
RFX4Q33E94 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFX4Q33E94 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFX4Q33E94 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFX4Q33E94 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.07■□□□□ 0.96
RFX4Q33E94 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.07■□□□□ 0.96
RFX4Q33E94 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
RFX4Q33E94 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
RFX4Q33E94 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFX4Q33E94 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
RFX4Q33E94 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFX4Q33E94 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.07■□□□□ 0.96
RFX4Q33E94 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFX4Q33E94 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFX4Q33E94 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RFX4Q33E94 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.06■□□□□ 0.96
RFX4Q33E94 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RFX4Q33E94 AL161729.1-201ENST00000604104 1402 ntBASIC21.06■□□□□ 0.96
RFX4Q33E94 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFX4Q33E94 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.06■□□□□ 0.96
RFX4Q33E94 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC21.06■□□□□ 0.96
RFX4Q33E94 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.06■□□□□ 0.96
RFX4Q33E94 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.06■□□□□ 0.96
RFX4Q33E94 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
RFX4Q33E94 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFX4Q33E94 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFX4Q33E94 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFX4Q33E94 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
RFX4Q33E94 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RFX4Q33E94 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC21.05■□□□□ 0.96
RFX4Q33E94 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFX4Q33E94 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.05■□□□□ 0.96
RFX4Q33E94 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.05■□□□□ 0.96
RFX4Q33E94 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFX4Q33E94 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.05■□□□□ 0.96
RFX4Q33E94 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX4Q33E94 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX4Q33E94 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX4Q33E94 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.04■□□□□ 0.96
RFX4Q33E94 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX4Q33E94 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms