Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
SF3A1Q15459 AL022069.1-201ENST00000568025 1636 ntBASIC26.2■■□□□ 1.78
SF3A1Q15459 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SF3A1Q15459 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
SF3A1Q15459 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SF3A1Q15459 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
SF3A1Q15459 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SF3A1Q15459 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SF3A1Q15459 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SF3A1Q15459 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC26.19■■□□□ 1.78
SF3A1Q15459 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC26.19■■□□□ 1.78
SF3A1Q15459 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC26.19■■□□□ 1.78
SF3A1Q15459 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SF3A1Q15459 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SF3A1Q15459 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SF3A1Q15459 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SF3A1Q15459 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
SF3A1Q15459 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SF3A1Q15459 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SF3A1Q15459 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC26.18■■□□□ 1.78
SF3A1Q15459 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SF3A1Q15459 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC26.18■■□□□ 1.78
SF3A1Q15459 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC26.18■■□□□ 1.78
SF3A1Q15459 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC26.18■■□□□ 1.78
SF3A1Q15459 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SF3A1Q15459 NFE2L3P1-201ENST00000588207 1959 ntBASIC26.18■■□□□ 1.78
SF3A1Q15459 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SF3A1Q15459 KRT18P24-201ENST00000344739 1156 ntBASIC26.17■■□□□ 1.78
SF3A1Q15459 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC26.17■■□□□ 1.78
SF3A1Q15459 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC26.17■■□□□ 1.78
SF3A1Q15459 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
SF3A1Q15459 AC012676.1-201ENST00000574705 1949 ntBASIC26.17■■□□□ 1.78
SF3A1Q15459 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SF3A1Q15459 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
SF3A1Q15459 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
SF3A1Q15459 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
SF3A1Q15459 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
SF3A1Q15459 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SF3A1Q15459 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC26.16■■□□□ 1.78
SF3A1Q15459 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SF3A1Q15459 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
SF3A1Q15459 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC26.16■■□□□ 1.78
SF3A1Q15459 ME2-208ENST00000638937 2471 ntTSL 5 BASIC26.15■■□□□ 1.78
SF3A1Q15459 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
SF3A1Q15459 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SF3A1Q15459 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC26.15■■□□□ 1.78
SF3A1Q15459 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC26.15■■□□□ 1.78
SF3A1Q15459 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
SF3A1Q15459 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
SF3A1Q15459 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC26.14■■□□□ 1.78
SF3A1Q15459 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC26.14■■□□□ 1.78
SF3A1Q15459 THA1P-201ENST00000590384 1145 ntBASIC26.14■■□□□ 1.78
SF3A1Q15459 AF131216.4-201ENST00000638924 1588 ntBASIC26.14■■□□□ 1.78
SF3A1Q15459 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC26.14■■□□□ 1.77
SF3A1Q15459 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC26.14■■□□□ 1.77
SF3A1Q15459 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.77
SF3A1Q15459 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC26.14■■□□□ 1.77
SF3A1Q15459 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
SF3A1Q15459 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
SF3A1Q15459 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
SF3A1Q15459 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC26.13■■□□□ 1.77
SF3A1Q15459 MIR4281-201ENST00000580852 62 ntBASIC26.13■■□□□ 1.77
SF3A1Q15459 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC26.13■■□□□ 1.77
SF3A1Q15459 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
SF3A1Q15459 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
SF3A1Q15459 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC26.13■■□□□ 1.77
SF3A1Q15459 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SF3A1Q15459 AC103834.1-201ENST00000520383 144 ntBASIC26.12■■□□□ 1.77
SF3A1Q15459 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC26.12■■□□□ 1.77
SF3A1Q15459 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC26.12■■□□□ 1.77
SF3A1Q15459 MIR4508-201ENST00000584178 70 ntBASIC26.12■■□□□ 1.77
SF3A1Q15459 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SF3A1Q15459 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC26.12■■□□□ 1.77
SF3A1Q15459 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SF3A1Q15459 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
SF3A1Q15459 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SF3A1Q15459 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SF3A1Q15459 LBH-205ENST00000407930 756 ntTSL 2 BASIC26.11■■□□□ 1.77
SF3A1Q15459 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC26.11■■□□□ 1.77
SF3A1Q15459 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC26.11■■□□□ 1.77
SF3A1Q15459 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
SF3A1Q15459 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
SF3A1Q15459 C9orf163-202ENST00000624034 2573 ntBASIC26.11■■□□□ 1.77
SF3A1Q15459 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC26.11■■□□□ 1.77
SF3A1Q15459 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SF3A1Q15459 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
SF3A1Q15459 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SF3A1Q15459 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC26.1■■□□□ 1.77
SF3A1Q15459 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC26.1■■□□□ 1.77
SF3A1Q15459 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SF3A1Q15459 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC26.1■■□□□ 1.77
SF3A1Q15459 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC26.1■■□□□ 1.77
SF3A1Q15459 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC26.09■■□□□ 1.77
SF3A1Q15459 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
SF3A1Q15459 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
SF3A1Q15459 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC26.09■■□□□ 1.77
SF3A1Q15459 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
SF3A1Q15459 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SF3A1Q15459 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
SF3A1Q15459 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms