Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
H3F3AP84243 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
H3F3AP84243 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
H3F3AP84243 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
H3F3AP84243 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.4■□□□□ 0.86
H3F3AP84243 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.4■□□□□ 0.86
H3F3AP84243 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.4■□□□□ 0.86
H3F3AP84243 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.4■□□□□ 0.86
H3F3AP84243 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.4■□□□□ 0.86
H3F3AP84243 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.4■□□□□ 0.86
H3F3AP84243 AC010997.5-201ENST00000609182 354 ntBASIC20.4■□□□□ 0.86
H3F3AP84243 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
H3F3AP84243 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
H3F3AP84243 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
H3F3AP84243 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.39■□□□□ 0.85
H3F3AP84243 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.39■□□□□ 0.85
H3F3AP84243 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.39■□□□□ 0.85
H3F3AP84243 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
H3F3AP84243 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
H3F3AP84243 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.39■□□□□ 0.85
H3F3AP84243 TSPY9P-201ENST00000440215 945 ntBASIC20.39■□□□□ 0.85
H3F3AP84243 TSPY11P-201ENST00000442607 1045 ntBASIC20.39■□□□□ 0.85
H3F3AP84243 MTDHP2-201ENST00000601468 714 ntBASIC20.39■□□□□ 0.85
H3F3AP84243 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.39■□□□□ 0.85
H3F3AP84243 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
H3F3AP84243 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
H3F3AP84243 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.38■□□□□ 0.85
H3F3AP84243 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
H3F3AP84243 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
H3F3AP84243 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
H3F3AP84243 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
H3F3AP84243 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.38■□□□□ 0.85
H3F3AP84243 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
H3F3AP84243 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
H3F3AP84243 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.37■□□□□ 0.85
H3F3AP84243 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
H3F3AP84243 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
H3F3AP84243 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.37■□□□□ 0.85
H3F3AP84243 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.37■□□□□ 0.85
H3F3AP84243 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.37■□□□□ 0.85
H3F3AP84243 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
H3F3AP84243 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
H3F3AP84243 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.37■□□□□ 0.85
H3F3AP84243 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
H3F3AP84243 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
H3F3AP84243 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
H3F3AP84243 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
H3F3AP84243 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
H3F3AP84243 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
H3F3AP84243 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
H3F3AP84243 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.36■□□□□ 0.85
H3F3AP84243 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.36■□□□□ 0.85
H3F3AP84243 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.36■□□□□ 0.85
H3F3AP84243 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
H3F3AP84243 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
H3F3AP84243 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
H3F3AP84243 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
H3F3AP84243 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
H3F3AP84243 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
H3F3AP84243 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
H3F3AP84243 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
H3F3AP84243 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
H3F3AP84243 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
H3F3AP84243 AC005703.6-201ENST00000623265 1329 ntBASIC20.34■□□□□ 0.85
H3F3AP84243 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
H3F3AP84243 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
H3F3AP84243 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
H3F3AP84243 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
H3F3AP84243 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
H3F3AP84243 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
H3F3AP84243 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
H3F3AP84243 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.33■□□□□ 0.85
H3F3AP84243 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.33■□□□□ 0.85
H3F3AP84243 KRT16P3-201ENST00000439127 1283 ntBASIC20.33■□□□□ 0.85
H3F3AP84243 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.33■□□□□ 0.85
H3F3AP84243 MIR6724-1-201ENST00000616420 92 ntBASIC20.33■□□□□ 0.85
H3F3AP84243 MIR6724-2-201ENST00000616483 92 ntBASIC20.33■□□□□ 0.85
H3F3AP84243 MIR6724-4-201ENST00000617390 92 ntBASIC20.33■□□□□ 0.85
H3F3AP84243 MIR6724-3-201ENST00000622482 92 ntBASIC20.33■□□□□ 0.85
H3F3AP84243 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
H3F3AP84243 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
H3F3AP84243 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
H3F3AP84243 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
H3F3AP84243 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.32■□□□□ 0.84
H3F3AP84243 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.32■□□□□ 0.84
H3F3AP84243 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.32■□□□□ 0.84
H3F3AP84243 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
H3F3AP84243 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
H3F3AP84243 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
H3F3AP84243 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
H3F3AP84243 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
H3F3AP84243 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
H3F3AP84243 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
H3F3AP84243 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
H3F3AP84243 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
H3F3AP84243 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.31■□□□□ 0.84
H3F3AP84243 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.31■□□□□ 0.84
H3F3AP84243 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
H3F3AP84243 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.31■□□□□ 0.84
H3F3AP84243 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms