Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA3P55318 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA3P55318 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA3P55318 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA3P55318 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA3P55318 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA3P55318 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA3P55318 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA3P55318 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
FOXA3P55318 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
FOXA3P55318 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA3P55318 HLA-V-202ENST00000446817 847 ntBASIC17.04■□□□□ 0.32
FOXA3P55318 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC17.04■□□□□ 0.32
FOXA3P55318 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA3P55318 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC17.04■□□□□ 0.32
FOXA3P55318 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA3P55318 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA3P55318 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA3P55318 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA3P55318 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC17.04■□□□□ 0.32
FOXA3P55318 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
FOXA3P55318 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA3P55318 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA3P55318 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
FOXA3P55318 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC17.03■□□□□ 0.32
FOXA3P55318 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
FOXA3P55318 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA3P55318 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA3P55318 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA3P55318 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
FOXA3P55318 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA3P55318 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA3P55318 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
FOXA3P55318 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA3P55318 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC17.02■□□□□ 0.31
FOXA3P55318 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
FOXA3P55318 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC17.02■□□□□ 0.31
FOXA3P55318 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
FOXA3P55318 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA3P55318 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
FOXA3P55318 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
FOXA3P55318 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA3P55318 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA3P55318 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
FOXA3P55318 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXA3P55318 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA3P55318 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA3P55318 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA3P55318 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC17.01■□□□□ 0.31
FOXA3P55318 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA3P55318 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC17■□□□□ 0.31
FOXA3P55318 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA3P55318 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA3P55318 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA3P55318 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
FOXA3P55318 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA3P55318 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA3P55318 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA3P55318 PFN2-211ENST00000489155 636 ntTSL 4 BASIC17■□□□□ 0.31
FOXA3P55318 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
FOXA3P55318 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
FOXA3P55318 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA3P55318 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA3P55318 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC17■□□□□ 0.31
FOXA3P55318 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA3P55318 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC17■□□□□ 0.31
FOXA3P55318 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA3P55318 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA3P55318 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC16.99■□□□□ 0.31
FOXA3P55318 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
FOXA3P55318 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
FOXA3P55318 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA3P55318 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA3P55318 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
FOXA3P55318 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA3P55318 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC16.99■□□□□ 0.31
FOXA3P55318 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
FOXA3P55318 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA3P55318 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC16.99■□□□□ 0.31
FOXA3P55318 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA3P55318 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
FOXA3P55318 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA3P55318 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA3P55318 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
FOXA3P55318 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA3P55318 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
FOXA3P55318 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA3P55318 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA3P55318 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA3P55318 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA3P55318 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC16.98■□□□□ 0.31
FOXA3P55318 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA3P55318 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC16.98■□□□□ 0.31
FOXA3P55318 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA3P55318 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC16.98■□□□□ 0.31
FOXA3P55318 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA3P55318 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
FOXA3P55318 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA3P55318 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
FOXA3P55318 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms