Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC097639.1-201ENST00000565519 1891 ntBASIC32.06■■■□□ 2.72
MSH6P52701 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC32.06■■■□□ 2.72
MSH6P52701 STK32C-205ENST00000456004 607 ntTSL 2 BASIC32.06■■■□□ 2.72
MSH6P52701 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC32.06■■■□□ 2.72
MSH6P52701 KRT18P14-201ENST00000534205 1250 ntBASIC32.06■■■□□ 2.72
MSH6P52701 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC32.05■■■□□ 2.72
MSH6P52701 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC32.05■■■□□ 2.72
MSH6P52701 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
MSH6P52701 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC32.05■■■□□ 2.72
MSH6P52701 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC32.05■■■□□ 2.72
MSH6P52701 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC32.05■■■□□ 2.72
MSH6P52701 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
MSH6P52701 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC32.05■■■□□ 2.72
MSH6P52701 AL354811.1-201ENST00000610286 706 ntBASIC32.05■■■□□ 2.72
MSH6P52701 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
MSH6P52701 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
MSH6P52701 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
MSH6P52701 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC32.04■■■□□ 2.72
MSH6P52701 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC32.04■■■□□ 2.72
MSH6P52701 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC32.04■■■□□ 2.72
MSH6P52701 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC32.03■■■□□ 2.72
MSH6P52701 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC32.03■■■□□ 2.72
MSH6P52701 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
MSH6P52701 MIR572-201ENST00000384983 95 ntBASIC32.03■■■□□ 2.72
MSH6P52701 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC32.03■■■□□ 2.72
MSH6P52701 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC32.03■■■□□ 2.72
MSH6P52701 IGHV3-19-201ENST00000521488 291 ntBASIC32.03■■■□□ 2.72
MSH6P52701 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC32.03■■■□□ 2.72
MSH6P52701 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC32.03■■■□□ 2.72
MSH6P52701 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
MSH6P52701 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
MSH6P52701 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
MSH6P52701 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
MSH6P52701 TERF1P2-201ENST00000583350 1212 ntBASIC32.02■■■□□ 2.72
MSH6P52701 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC32.02■■■□□ 2.72
MSH6P52701 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC32.02■■■□□ 2.72
MSH6P52701 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC32.02■■■□□ 2.72
MSH6P52701 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC32.01■■■□□ 2.72
MSH6P52701 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC32.01■■■□□ 2.72
MSH6P52701 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC32.01■■■□□ 2.72
MSH6P52701 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
MSH6P52701 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC32.01■■■□□ 2.71
MSH6P52701 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
MSH6P52701 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC32.01■■■□□ 2.71
MSH6P52701 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC32.01■■■□□ 2.71
MSH6P52701 EMC9-206ENST00000560403 872 ntTSL 2 BASIC32■■■□□ 2.71
MSH6P52701 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC32■■■□□ 2.71
MSH6P52701 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC32■■■□□ 2.71
MSH6P52701 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
MSH6P52701 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC32■■■□□ 2.71
MSH6P52701 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC32■■■□□ 2.71
MSH6P52701 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
MSH6P52701 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
MSH6P52701 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
MSH6P52701 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC31.99■■■□□ 2.71
MSH6P52701 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC31.99■■■□□ 2.71
MSH6P52701 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
MSH6P52701 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC31.98■■■□□ 2.71
MSH6P52701 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC31.98■■■□□ 2.71
MSH6P52701 AC142086.6-201ENST00000621154 1765 ntBASIC31.98■■■□□ 2.71
MSH6P52701 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC31.98■■■□□ 2.71
MSH6P52701 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
MSH6P52701 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
MSH6P52701 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
MSH6P52701 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC31.97■■■□□ 2.71
MSH6P52701 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC31.97■■■□□ 2.71
MSH6P52701 VGF-203ENST00000611537 1622 ntTSL 5 BASIC31.97■■■□□ 2.71
MSH6P52701 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
MSH6P52701 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
MSH6P52701 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC31.96■■■□□ 2.71
MSH6P52701 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
MSH6P52701 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC31.96■■■□□ 2.71
MSH6P52701 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC31.95■■■□□ 2.71
MSH6P52701 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC31.95■■■□□ 2.71
MSH6P52701 RAP2CP1-201ENST00000605103 478 ntBASIC31.95■■■□□ 2.71
MSH6P52701 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC31.95■■■□□ 2.71
MSH6P52701 AC080038.1-201ENST00000611274 1154 ntBASIC31.95■■■□□ 2.71
MSH6P52701 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC31.95■■■□□ 2.71
MSH6P52701 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
MSH6P52701 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC31.94■■■□□ 2.7
MSH6P52701 pRNA.6-201ENST00000610482 90 ntBASIC31.94■■■□□ 2.7
MSH6P52701 pRNA.5-201ENST00000612139 90 ntBASIC31.94■■■□□ 2.7
MSH6P52701 GXYLT1P5-201ENST00000614548 1189 ntBASIC31.94■■■□□ 2.7
MSH6P52701 pRNA.11-201ENST00000618423 90 ntBASIC31.94■■■□□ 2.7
MSH6P52701 pRNA.13-201ENST00000619112 90 ntBASIC31.94■■■□□ 2.7
MSH6P52701 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC31.94■■■□□ 2.7
MSH6P52701 AC096887.2-201ENST00000623443 1957 ntBASIC31.94■■■□□ 2.7
MSH6P52701 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC31.94■■■□□ 2.7
MSH6P52701 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC31.94■■■□□ 2.7
MSH6P52701 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC31.93■■■□□ 2.7
MSH6P52701 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC31.93■■■□□ 2.7
MSH6P52701 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
MSH6P52701 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC31.93■■■□□ 2.7
MSH6P52701 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
MSH6P52701 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC31.93■■■□□ 2.7
MSH6P52701 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
MSH6P52701 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC31.92■■■□□ 2.7
MSH6P52701 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC31.92■■■□□ 2.7
MSH6P52701 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
MSH6P52701 LINC02228-203ENST00000641970 1355 ntBASIC31.92■■■□□ 2.7
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms