Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.82■■□□□ 1.4
APOEP02649 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC23.82■■□□□ 1.4
APOEP02649 MIR6724-1-201ENST00000616420 92 ntBASIC23.82■■□□□ 1.4
APOEP02649 MIR6724-2-201ENST00000616483 92 ntBASIC23.82■■□□□ 1.4
APOEP02649 MIR6724-4-201ENST00000617390 92 ntBASIC23.82■■□□□ 1.4
APOEP02649 MIR6724-3-201ENST00000622482 92 ntBASIC23.82■■□□□ 1.4
APOEP02649 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
APOEP02649 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
APOEP02649 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
APOEP02649 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
APOEP02649 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
APOEP02649 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
APOEP02649 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC23.81■■□□□ 1.4
APOEP02649 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
APOEP02649 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
APOEP02649 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
APOEP02649 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
APOEP02649 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC23.81■■□□□ 1.4
APOEP02649 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
APOEP02649 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
APOEP02649 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
APOEP02649 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC23.81■■□□□ 1.4
APOEP02649 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
APOEP02649 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
APOEP02649 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
APOEP02649 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
APOEP02649 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
APOEP02649 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
APOEP02649 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC23.8■■□□□ 1.4
APOEP02649 AC131212.1-201ENST00000613771 668 ntBASIC23.8■■□□□ 1.4
APOEP02649 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC23.8■■□□□ 1.4
APOEP02649 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
APOEP02649 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC23.79■■□□□ 1.4
APOEP02649 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
APOEP02649 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
APOEP02649 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
APOEP02649 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC23.79■■□□□ 1.4
APOEP02649 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
APOEP02649 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC23.79■■□□□ 1.4
APOEP02649 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
APOEP02649 CLTA-206ENST00000466396 695 ntTSL 2 BASIC23.78■■□□□ 1.4
APOEP02649 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC23.78■■□□□ 1.4
APOEP02649 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
APOEP02649 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
APOEP02649 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
APOEP02649 AC141586.4-201ENST00000624558 1573 ntBASIC23.78■■□□□ 1.4
APOEP02649 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
APOEP02649 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC23.77■■□□□ 1.4
APOEP02649 TFPT-201ENST00000391757 774 ntTSL 5 BASIC23.77■■□□□ 1.4
APOEP02649 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
APOEP02649 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
APOEP02649 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
APOEP02649 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
APOEP02649 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.77■■□□□ 1.4
APOEP02649 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.77■■□□□ 1.4
APOEP02649 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
APOEP02649 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC23.76■■□□□ 1.39
APOEP02649 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
APOEP02649 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC23.76■■□□□ 1.39
APOEP02649 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC23.76■■□□□ 1.39
APOEP02649 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.76■■□□□ 1.39
APOEP02649 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
APOEP02649 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
APOEP02649 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
APOEP02649 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
APOEP02649 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC23.75■■□□□ 1.39
APOEP02649 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
APOEP02649 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
APOEP02649 AC005703.6-201ENST00000623265 1329 ntBASIC23.75■■□□□ 1.39
APOEP02649 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
APOEP02649 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.75■■□□□ 1.39
APOEP02649 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
APOEP02649 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
APOEP02649 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
APOEP02649 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
APOEP02649 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
APOEP02649 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC23.73■■□□□ 1.39
APOEP02649 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
APOEP02649 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC23.73■■□□□ 1.39
APOEP02649 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC23.73■■□□□ 1.39
APOEP02649 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC23.73■■□□□ 1.39
APOEP02649 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC23.73■■□□□ 1.39
APOEP02649 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
APOEP02649 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
APOEP02649 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
APOEP02649 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
APOEP02649 LTK-203ENST00000453182 2412 ntTSL 2 BASIC23.72■■□□□ 1.39
APOEP02649 AK3-203ENST00000447596 705 ntTSL 2 BASIC23.72■■□□□ 1.39
APOEP02649 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC23.72■■□□□ 1.39
APOEP02649 AL117332.1-201ENST00000622628 974 ntBASIC23.72■■□□□ 1.39
APOEP02649 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
APOEP02649 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
APOEP02649 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
APOEP02649 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC23.72■■□□□ 1.39
APOEP02649 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC23.72■■□□□ 1.39
APOEP02649 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
APOEP02649 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
APOEP02649 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
APOEP02649 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC23.71■■□□□ 1.39
APOEP02649 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms