Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.22■□□□□ 0.99
PRKNO60260 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.22■□□□□ 0.99
PRKNO60260 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
PRKNO60260 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.22■□□□□ 0.99
PRKNO60260 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.21■□□□□ 0.99
PRKNO60260 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PRKNO60260 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.21■□□□□ 0.99
PRKNO60260 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.21■□□□□ 0.99
PRKNO60260 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PRKNO60260 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.21■□□□□ 0.99
PRKNO60260 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.21■□□□□ 0.99
PRKNO60260 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.21■□□□□ 0.99
PRKNO60260 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PRKNO60260 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PRKNO60260 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PRKNO60260 AC093323.1-202ENST00000635031 2045 ntBASIC21.21■□□□□ 0.99
PRKNO60260 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.99
PRKNO60260 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PRKNO60260 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PRKNO60260 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
PRKNO60260 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.2■□□□□ 0.98
PRKNO60260 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.2■□□□□ 0.98
PRKNO60260 AC131281.2-201ENST00000520478 145 ntBASIC21.2■□□□□ 0.98
PRKNO60260 AL356740.2-201ENST00000601559 647 ntBASIC21.2■□□□□ 0.98
PRKNO60260 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.2■□□□□ 0.98
PRKNO60260 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.2■□□□□ 0.98
PRKNO60260 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.2■□□□□ 0.98
PRKNO60260 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
PRKNO60260 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRKNO60260 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PRKNO60260 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.19■□□□□ 0.98
PRKNO60260 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
PRKNO60260 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.19■□□□□ 0.98
PRKNO60260 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.19■□□□□ 0.98
PRKNO60260 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.19■□□□□ 0.98
PRKNO60260 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRKNO60260 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
PRKNO60260 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
PRKNO60260 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.19■□□□□ 0.98
PRKNO60260 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PRKNO60260 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PRKNO60260 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.18■□□□□ 0.98
PRKNO60260 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PRKNO60260 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.18■□□□□ 0.98
PRKNO60260 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.18■□□□□ 0.98
PRKNO60260 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.18■□□□□ 0.98
PRKNO60260 AL161729.1-201ENST00000604104 1402 ntBASIC21.18■□□□□ 0.98
PRKNO60260 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
PRKNO60260 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
PRKNO60260 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
PRKNO60260 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PRKNO60260 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PRKNO60260 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PRKNO60260 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PRKNO60260 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PRKNO60260 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.17■□□□□ 0.98
PRKNO60260 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.17■□□□□ 0.98
PRKNO60260 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.17■□□□□ 0.98
PRKNO60260 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PRKNO60260 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.17■□□□□ 0.98
PRKNO60260 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PRKNO60260 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PRKNO60260 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRKNO60260 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRKNO60260 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PRKNO60260 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRKNO60260 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PRKNO60260 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRKNO60260 AC008406.3-201ENST00000620001 1374 ntBASIC21.16■□□□□ 0.98
PRKNO60260 AC005703.6-201ENST00000623265 1329 ntBASIC21.16■□□□□ 0.98
PRKNO60260 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PRKNO60260 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PRKNO60260 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRKNO60260 AL512631.2-201ENST00000604634 923 ntBASIC21.16■□□□□ 0.98
PRKNO60260 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRKNO60260 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRKNO60260 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRKNO60260 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PRKNO60260 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRKNO60260 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRKNO60260 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.15■□□□□ 0.98
PRKNO60260 MIR4466-201ENST00000606121 54 ntBASIC21.15■□□□□ 0.98
PRKNO60260 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRKNO60260 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PRKNO60260 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRKNO60260 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
PRKNO60260 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PRKNO60260 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
PRKNO60260 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PRKNO60260 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PRKNO60260 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
PRKNO60260 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PRKNO60260 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PRKNO60260 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PRKNO60260 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.14■□□□□ 0.97
PRKNO60260 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PRKNO60260 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
PRKNO60260 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PRKNO60260 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
PRKNO60260 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms