Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.6■■□□□ 1.05
PROM1O43490 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.6■■□□□ 1.05
PROM1O43490 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.6■■□□□ 1.05
PROM1O43490 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PROM1O43490 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PROM1O43490 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.59■■□□□ 1.05
PROM1O43490 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.59■■□□□ 1.05
PROM1O43490 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.59■■□□□ 1.05
PROM1O43490 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PROM1O43490 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.59■■□□□ 1.05
PROM1O43490 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.59■■□□□ 1.05
PROM1O43490 MIR4787-201ENST00000607364 84 ntBASIC21.59■■□□□ 1.05
PROM1O43490 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PROM1O43490 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PROM1O43490 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
PROM1O43490 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PROM1O43490 AC092028.1-203ENST00000608262 953 ntBASIC21.58■■□□□ 1.05
PROM1O43490 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PROM1O43490 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PROM1O43490 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PROM1O43490 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
PROM1O43490 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PROM1O43490 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PROM1O43490 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.57■■□□□ 1.04
PROM1O43490 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PROM1O43490 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PROM1O43490 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.57■■□□□ 1.04
PROM1O43490 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.57■■□□□ 1.04
PROM1O43490 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.57■■□□□ 1.04
PROM1O43490 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PROM1O43490 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PROM1O43490 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PROM1O43490 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.57■■□□□ 1.04
PROM1O43490 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
PROM1O43490 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PROM1O43490 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
PROM1O43490 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PROM1O43490 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.56■■□□□ 1.04
PROM1O43490 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PROM1O43490 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.56■■□□□ 1.04
PROM1O43490 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.56■■□□□ 1.04
PROM1O43490 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
PROM1O43490 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
PROM1O43490 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PROM1O43490 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
PROM1O43490 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PROM1O43490 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PROM1O43490 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PROM1O43490 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
PROM1O43490 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.55■■□□□ 1.04
PROM1O43490 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
PROM1O43490 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
PROM1O43490 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.55■■□□□ 1.04
PROM1O43490 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
PROM1O43490 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PROM1O43490 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.55■■□□□ 1.04
PROM1O43490 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.55■■□□□ 1.04
PROM1O43490 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PROM1O43490 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PROM1O43490 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
PROM1O43490 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PROM1O43490 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PROM1O43490 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PROM1O43490 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.54■■□□□ 1.04
PROM1O43490 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.54■■□□□ 1.04
PROM1O43490 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PROM1O43490 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
PROM1O43490 MIR6722-201ENST00000617286 78 ntBASIC21.54■■□□□ 1.04
PROM1O43490 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.54■■□□□ 1.04
PROM1O43490 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.54■■□□□ 1.04
PROM1O43490 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PROM1O43490 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.53■■□□□ 1.04
PROM1O43490 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.53■■□□□ 1.04
PROM1O43490 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PROM1O43490 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PROM1O43490 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
PROM1O43490 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
PROM1O43490 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
PROM1O43490 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.53■■□□□ 1.04
PROM1O43490 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PROM1O43490 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PROM1O43490 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
PROM1O43490 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.53■■□□□ 1.04
PROM1O43490 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.53■■□□□ 1.04
PROM1O43490 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.53■■□□□ 1.04
PROM1O43490 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PROM1O43490 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PROM1O43490 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
PROM1O43490 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.52■■□□□ 1.04
PROM1O43490 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PROM1O43490 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.52■■□□□ 1.04
PROM1O43490 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PROM1O43490 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
PROM1O43490 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.52■■□□□ 1.04
PROM1O43490 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.52■■□□□ 1.04
PROM1O43490 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.52■■□□□ 1.04
PROM1O43490 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.52■■□□□ 1.04
PROM1O43490 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
PROM1O43490 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
PROM1O43490 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms