Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
MSH4O15457 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC25.76■■□□□ 1.71
MSH4O15457 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC25.76■■□□□ 1.71
MSH4O15457 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
MSH4O15457 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC25.75■■□□□ 1.71
MSH4O15457 EI24-213ENST00000618552 1747 ntTSL 5 BASIC25.75■■□□□ 1.71
MSH4O15457 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC25.75■■□□□ 1.71
MSH4O15457 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
MSH4O15457 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
MSH4O15457 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC25.75■■□□□ 1.71
MSH4O15457 AL512631.2-201ENST00000604634 923 ntBASIC25.75■■□□□ 1.71
MSH4O15457 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC25.75■■□□□ 1.71
MSH4O15457 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC25.75■■□□□ 1.71
MSH4O15457 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC25.74■■□□□ 1.71
MSH4O15457 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
MSH4O15457 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC25.74■■□□□ 1.71
MSH4O15457 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
MSH4O15457 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC25.74■■□□□ 1.71
MSH4O15457 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
MSH4O15457 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
MSH4O15457 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC25.74■■□□□ 1.71
MSH4O15457 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
MSH4O15457 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
MSH4O15457 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
MSH4O15457 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC25.73■■□□□ 1.71
MSH4O15457 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
MSH4O15457 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
MSH4O15457 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
MSH4O15457 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
MSH4O15457 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC25.73■■□□□ 1.71
MSH4O15457 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
MSH4O15457 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC25.73■■□□□ 1.71
MSH4O15457 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
MSH4O15457 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC25.72■■□□□ 1.71
MSH4O15457 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC25.72■■□□□ 1.71
MSH4O15457 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
MSH4O15457 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC25.72■■□□□ 1.71
MSH4O15457 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
MSH4O15457 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC25.72■■□□□ 1.71
MSH4O15457 USF2-207ENST00000595068 1612 ntTSL 5 BASIC25.72■■□□□ 1.71
MSH4O15457 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC25.72■■□□□ 1.71
MSH4O15457 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC25.72■■□□□ 1.71
MSH4O15457 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
MSH4O15457 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC25.71■■□□□ 1.71
MSH4O15457 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC25.71■■□□□ 1.71
MSH4O15457 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
MSH4O15457 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
MSH4O15457 MIR4466-201ENST00000606121 54 ntBASIC25.71■■□□□ 1.71
MSH4O15457 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC25.71■■□□□ 1.71
MSH4O15457 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
MSH4O15457 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC25.71■■□□□ 1.71
MSH4O15457 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.71
MSH4O15457 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
MSH4O15457 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC25.7■■□□□ 1.7
MSH4O15457 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
MSH4O15457 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
MSH4O15457 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC25.7■■□□□ 1.7
MSH4O15457 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
MSH4O15457 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
MSH4O15457 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC25.7■■□□□ 1.7
MSH4O15457 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
MSH4O15457 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
MSH4O15457 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC25.69■■□□□ 1.7
MSH4O15457 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC25.69■■□□□ 1.7
MSH4O15457 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC25.69■■□□□ 1.7
MSH4O15457 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
MSH4O15457 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
MSH4O15457 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
MSH4O15457 AC008406.3-201ENST00000620001 1374 ntBASIC25.68■■□□□ 1.7
MSH4O15457 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
MSH4O15457 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
MSH4O15457 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
MSH4O15457 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
MSH4O15457 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
MSH4O15457 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC25.67■■□□□ 1.7
MSH4O15457 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
MSH4O15457 ABCB10P4-201ENST00000566803 2184 ntBASIC25.66■■□□□ 1.7
MSH4O15457 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC25.66■■□□□ 1.7
MSH4O15457 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH4O15457 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH4O15457 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH4O15457 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC25.65■■□□□ 1.7
MSH4O15457 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
MSH4O15457 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
MSH4O15457 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
MSH4O15457 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC25.65■■□□□ 1.7
MSH4O15457 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
MSH4O15457 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC25.65■■□□□ 1.7
MSH4O15457 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
MSH4O15457 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
MSH4O15457 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.7
MSH4O15457 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
MSH4O15457 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
MSH4O15457 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
MSH4O15457 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC25.64■■□□□ 1.7
MSH4O15457 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC25.64■■□□□ 1.7
MSH4O15457 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC25.64■■□□□ 1.7
MSH4O15457 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
MSH4O15457 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
MSH4O15457 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms