Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.8■□□□□ 0.92
COL6A6A6NMZ7 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC20.8■□□□□ 0.92
COL6A6A6NMZ7 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC20.8■□□□□ 0.92
COL6A6A6NMZ7 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL6A6A6NMZ7 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.8■□□□□ 0.92
COL6A6A6NMZ7 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.8■□□□□ 0.92
COL6A6A6NMZ7 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL6A6A6NMZ7 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.8■□□□□ 0.92
COL6A6A6NMZ7 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.8■□□□□ 0.92
COL6A6A6NMZ7 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
COL6A6A6NMZ7 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL6A6A6NMZ7 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL6A6A6NMZ7 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.79■□□□□ 0.92
COL6A6A6NMZ7 AC142086.2-201ENST00000569753 217 ntBASIC20.79■□□□□ 0.92
COL6A6A6NMZ7 AC073111.5-205ENST00000641717 521 ntBASIC20.79■□□□□ 0.92
COL6A6A6NMZ7 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.79■□□□□ 0.92
COL6A6A6NMZ7 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
COL6A6A6NMZ7 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
COL6A6A6NMZ7 TSPY20P-201ENST00000450910 630 ntBASIC20.79■□□□□ 0.92
COL6A6A6NMZ7 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL6A6A6NMZ7 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL6A6A6NMZ7 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL6A6A6NMZ7 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.78■□□□□ 0.92
COL6A6A6NMZ7 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL6A6A6NMZ7 IGHV3-19-201ENST00000521488 291 ntBASIC20.78■□□□□ 0.92
COL6A6A6NMZ7 MIR6084-201ENST00000622012 110 ntBASIC20.78■□□□□ 0.92
COL6A6A6NMZ7 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL6A6A6NMZ7 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL6A6A6NMZ7 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.78■□□□□ 0.92
COL6A6A6NMZ7 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL6A6A6NMZ7 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.78■□□□□ 0.92
COL6A6A6NMZ7 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL6A6A6NMZ7 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.77■□□□□ 0.92
COL6A6A6NMZ7 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL6A6A6NMZ7 AC137761.2-201ENST00000561729 223 ntBASIC20.76■□□□□ 0.91
COL6A6A6NMZ7 AC145350.3-201ENST00000569033 163 ntBASIC20.76■□□□□ 0.91
COL6A6A6NMZ7 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
COL6A6A6NMZ7 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC20.76■□□□□ 0.91
COL6A6A6NMZ7 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL6A6A6NMZ7 CD99P1-205ENST00000527459 561 ntBASIC20.76■□□□□ 0.91
COL6A6A6NMZ7 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL6A6A6NMZ7 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.76■□□□□ 0.91
COL6A6A6NMZ7 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 NCF1B-203ENST00000435988 1254 ntBASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 CROCCP5-201ENST00000436658 830 ntBASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.75■□□□□ 0.91
COL6A6A6NMZ7 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.74■□□□□ 0.91
COL6A6A6NMZ7 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.74■□□□□ 0.91
COL6A6A6NMZ7 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
COL6A6A6NMZ7 AL109923.1-201ENST00000618799 583 ntBASIC20.74■□□□□ 0.91
COL6A6A6NMZ7 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A6A6NMZ7 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
COL6A6A6NMZ7 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A6A6NMZ7 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A6A6NMZ7 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A6A6NMZ7 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.74■□□□□ 0.91
COL6A6A6NMZ7 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.74■□□□□ 0.91
COL6A6A6NMZ7 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A6A6NMZ7 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
COL6A6A6NMZ7 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 AL499627.2-201ENST00000606283 725 ntBASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
COL6A6A6NMZ7 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms