Protein–RNA interactions for Protein: A6NCS4

NKX2-6, Homeobox protein Nkx-2.6, humanhuman

Predictions only

Length 301 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-6A6NCS4 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-6A6NCS4 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-6A6NCS4 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
NKX2-6A6NCS4 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
NKX2-6A6NCS4 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
NKX2-6A6NCS4 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-6A6NCS4 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.23■□□□□ 0.83
NKX2-6A6NCS4 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-6A6NCS4 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.23■□□□□ 0.83
NKX2-6A6NCS4 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.23■□□□□ 0.83
NKX2-6A6NCS4 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-6A6NCS4 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.23■□□□□ 0.83
NKX2-6A6NCS4 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.23■□□□□ 0.83
NKX2-6A6NCS4 AC092171.4-201ENST00000609130 632 ntBASIC20.23■□□□□ 0.83
NKX2-6A6NCS4 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
NKX2-6A6NCS4 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC20.23■□□□□ 0.83
NKX2-6A6NCS4 AC131274.2-201ENST00000580697 1507 ntBASIC20.22■□□□□ 0.83
NKX2-6A6NCS4 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.22■□□□□ 0.83
NKX2-6A6NCS4 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-6A6NCS4 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.22■□□□□ 0.83
NKX2-6A6NCS4 SERBP1P1-201ENST00000396021 1160 ntBASIC20.22■□□□□ 0.83
NKX2-6A6NCS4 AC091305.1-201ENST00000479476 895 ntBASIC20.22■□□□□ 0.83
NKX2-6A6NCS4 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.22■□□□□ 0.83
NKX2-6A6NCS4 AC099791.2-201ENST00000605725 427 ntBASIC20.22■□□□□ 0.83
NKX2-6A6NCS4 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.22■□□□□ 0.83
NKX2-6A6NCS4 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-6A6NCS4 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-6A6NCS4 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-6A6NCS4 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-6A6NCS4 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-6A6NCS4 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-6A6NCS4 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-6A6NCS4 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-6A6NCS4 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-6A6NCS4 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-6A6NCS4 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
NKX2-6A6NCS4 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-6A6NCS4 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-6A6NCS4 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-6A6NCS4 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-6A6NCS4 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX2-6A6NCS4 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX2-6A6NCS4 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX2-6A6NCS4 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
NKX2-6A6NCS4 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.2■□□□□ 0.82
NKX2-6A6NCS4 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NKX2-6A6NCS4 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NKX2-6A6NCS4 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NKX2-6A6NCS4 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX2-6A6NCS4 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
NKX2-6A6NCS4 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX2-6A6NCS4 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX2-6A6NCS4 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NKX2-6A6NCS4 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.2■□□□□ 0.82
NKX2-6A6NCS4 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20.19■□□□□ 0.82
NKX2-6A6NCS4 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NKX2-6A6NCS4 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
NKX2-6A6NCS4 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
NKX2-6A6NCS4 CA15P2-201ENST00000611168 834 ntBASIC20.19■□□□□ 0.82
NKX2-6A6NCS4 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.19■□□□□ 0.82
NKX2-6A6NCS4 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
NKX2-6A6NCS4 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-6A6NCS4 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.18■□□□□ 0.82
NKX2-6A6NCS4 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-6A6NCS4 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.18■□□□□ 0.82
NKX2-6A6NCS4 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-6A6NCS4 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-6A6NCS4 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.18■□□□□ 0.82
NKX2-6A6NCS4 CEBPA-AS1-201ENST00000592982 2198 ntBASIC20.18■□□□□ 0.82
NKX2-6A6NCS4 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.18■□□□□ 0.82
NKX2-6A6NCS4 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-6A6NCS4 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
NKX2-6A6NCS4 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
NKX2-6A6NCS4 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.17■□□□□ 0.82
NKX2-6A6NCS4 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.17■□□□□ 0.82
NKX2-6A6NCS4 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
NKX2-6A6NCS4 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NKX2-6A6NCS4 AC008764.7-201ENST00000593779 1081 ntBASIC20.17■□□□□ 0.82
NKX2-6A6NCS4 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.17■□□□□ 0.82
NKX2-6A6NCS4 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NKX2-6A6NCS4 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX2-6A6NCS4 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NKX2-6A6NCS4 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NKX2-6A6NCS4 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NKX2-6A6NCS4 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NKX2-6A6NCS4 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NKX2-6A6NCS4 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.16■□□□□ 0.82
NKX2-6A6NCS4 RASA4CP-201ENST00000424092 1398 ntBASIC20.16■□□□□ 0.82
NKX2-6A6NCS4 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
NKX2-6A6NCS4 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.16■□□□□ 0.82
NKX2-6A6NCS4 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
NKX2-6A6NCS4 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NKX2-6A6NCS4 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.16■□□□□ 0.82
NKX2-6A6NCS4 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX2-6A6NCS4 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.15■□□□□ 0.82
NKX2-6A6NCS4 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NKX2-6A6NCS4 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.15■□□□□ 0.82
NKX2-6A6NCS4 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.15■□□□□ 0.82
NKX2-6A6NCS4 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.15■□□□□ 0.82
NKX2-6A6NCS4 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms