Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL157996.1-201ENST00000624684 2299 ntBASIC16.82■□□□□ 0.28
USP28Q96RU2 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
USP28Q96RU2 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC16.82■□□□□ 0.28
USP28Q96RU2 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC16.82■□□□□ 0.28
USP28Q96RU2 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC16.82■□□□□ 0.28
USP28Q96RU2 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC16.82■□□□□ 0.28
USP28Q96RU2 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC16.82■□□□□ 0.28
USP28Q96RU2 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC16.82■□□□□ 0.28
USP28Q96RU2 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC16.81■□□□□ 0.28
USP28Q96RU2 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
USP28Q96RU2 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
USP28Q96RU2 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
USP28Q96RU2 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 TPM3P8-201ENST00000330554 643 ntBASIC16.81■□□□□ 0.28
USP28Q96RU2 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC16.81■□□□□ 0.28
USP28Q96RU2 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
USP28Q96RU2 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 AP006294.1-201ENST00000415407 339 ntBASIC16.81■□□□□ 0.28
USP28Q96RU2 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC16.81■□□□□ 0.28
USP28Q96RU2 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC16.81■□□□□ 0.28
USP28Q96RU2 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
USP28Q96RU2 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.81■□□□□ 0.28
USP28Q96RU2 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC16.81■□□□□ 0.28
USP28Q96RU2 AC132938.4-201ENST00000623835 848 ntBASIC16.81■□□□□ 0.28
USP28Q96RU2 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC16.81■□□□□ 0.28
USP28Q96RU2 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC16.81■□□□□ 0.28
USP28Q96RU2 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC16.81■□□□□ 0.28
USP28Q96RU2 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
USP28Q96RU2 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP28Q96RU2 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC16.81■□□□□ 0.28
USP28Q96RU2 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC16.81■□□□□ 0.28
USP28Q96RU2 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP28Q96RU2 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC16.8■□□□□ 0.28
USP28Q96RU2 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC16.8■□□□□ 0.28
USP28Q96RU2 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP28Q96RU2 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC16.8■□□□□ 0.28
USP28Q96RU2 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USP28Q96RU2 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
USP28Q96RU2 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC16.8■□□□□ 0.28
USP28Q96RU2 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP28Q96RU2 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC16.8■□□□□ 0.28
USP28Q96RU2 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USP28Q96RU2 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP28Q96RU2 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC16.8■□□□□ 0.28
USP28Q96RU2 AC079781.5-202ENST00000641784 3743 ntBASIC16.8■□□□□ 0.28
USP28Q96RU2 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
USP28Q96RU2 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP28Q96RU2 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USP28Q96RU2 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
USP28Q96RU2 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP28Q96RU2 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
USP28Q96RU2 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP28Q96RU2 GUK1-206ENST00000366723 845 ntTSL 5 BASIC16.8■□□□□ 0.28
USP28Q96RU2 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USP28Q96RU2 AC092933.1-201ENST00000393644 945 ntBASIC16.8■□□□□ 0.28
USP28Q96RU2 AC004945.1-201ENST00000416738 983 ntBASIC16.8■□□□□ 0.28
USP28Q96RU2 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.8■□□□□ 0.28
USP28Q96RU2 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.8■□□□□ 0.28
USP28Q96RU2 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.8■□□□□ 0.28
USP28Q96RU2 AC011495.1-201ENST00000498085 584 ntBASIC16.8■□□□□ 0.28
USP28Q96RU2 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.8■□□□□ 0.28
USP28Q96RU2 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC16.8■□□□□ 0.28
USP28Q96RU2 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.8■□□□□ 0.28
USP28Q96RU2 MIR4683-201ENST00000579659 81 ntBASIC16.8■□□□□ 0.28
USP28Q96RU2 OR10B1P-201ENST00000601666 907 ntBASIC16.8■□□□□ 0.28
USP28Q96RU2 MVK-217ENST00000639206 367 ntTSL 5 BASIC16.8■□□□□ 0.28
USP28Q96RU2 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC16.8■□□□□ 0.28
USP28Q96RU2 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC16.8■□□□□ 0.28
USP28Q96RU2 AC111170.3-201ENST00000624282 2464 ntBASIC16.8■□□□□ 0.28
USP28Q96RU2 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP28Q96RU2 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC16.8■□□□□ 0.28
USP28Q96RU2 AC105206.1-202ENST00000314927 2368 ntBASIC16.8■□□□□ 0.28
USP28Q96RU2 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP28Q96RU2 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP28Q96RU2 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms