Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
HPS3Q969F9 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HPS3Q969F9 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC16.3■□□□□ 0.2
HPS3Q969F9 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC16.3■□□□□ 0.2
HPS3Q969F9 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
HPS3Q969F9 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC16.3■□□□□ 0.2
HPS3Q969F9 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HPS3Q969F9 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HPS3Q969F9 USP4-203ENST00000415188 1454 ntTSL 3 BASIC16.3■□□□□ 0.2
HPS3Q969F9 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HPS3Q969F9 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HPS3Q969F9 HSPA8P5-201ENST00000456928 2069 ntBASIC16.3■□□□□ 0.2
HPS3Q969F9 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HPS3Q969F9 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
HPS3Q969F9 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HPS3Q969F9 AC016397.2-201ENST00000624848 1985 ntBASIC16.3■□□□□ 0.2
HPS3Q969F9 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HPS3Q969F9 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HPS3Q969F9 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC16.3■□□□□ 0.2
HPS3Q969F9 AC234783.1-201ENST00000441761 496 ntBASIC16.3■□□□□ 0.2
HPS3Q969F9 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC16.3■□□□□ 0.2
HPS3Q969F9 HIST2H2BB-201ENST00000449108 381 ntBASIC16.3■□□□□ 0.2
HPS3Q969F9 CICP12-201ENST00000455801 843 ntBASIC16.3■□□□□ 0.2
HPS3Q969F9 ACA64.2-201ENST00000459014 129 ntBASIC16.3■□□□□ 0.2
HPS3Q969F9 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC16.3■□□□□ 0.2
HPS3Q969F9 ALG3P1-201ENST00000508806 1114 ntBASIC16.3■□□□□ 0.2
HPS3Q969F9 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC16.3■□□□□ 0.2
HPS3Q969F9 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC16.3■□□□□ 0.2
HPS3Q969F9 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HPS3Q969F9 AC106886.1-201ENST00000568660 600 ntBASIC16.3■□□□□ 0.2
HPS3Q969F9 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC16.3■□□□□ 0.2
HPS3Q969F9 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC16.3■□□□□ 0.2
HPS3Q969F9 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC16.3■□□□□ 0.2
HPS3Q969F9 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC16.3■□□□□ 0.2
HPS3Q969F9 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HPS3Q969F9 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HPS3Q969F9 BANP-203ENST00000393207 2438 ntTSL 2 BASIC16.3■□□□□ 0.2
HPS3Q969F9 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HPS3Q969F9 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HPS3Q969F9 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HPS3Q969F9 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HPS3Q969F9 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
HPS3Q969F9 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC16.3■□□□□ 0.2
HPS3Q969F9 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HPS3Q969F9 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HPS3Q969F9 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC16.3■□□□□ 0.2
HPS3Q969F9 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
HPS3Q969F9 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HPS3Q969F9 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC16.29■□□□□ 0.2
HPS3Q969F9 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 AC099336.1-201ENST00000417053 1171 ntBASIC16.29■□□□□ 0.2
HPS3Q969F9 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC16.29■□□□□ 0.2
HPS3Q969F9 WBP2-203ENST00000433525 928 ntTSL 2 BASIC16.29■□□□□ 0.2
HPS3Q969F9 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC16.29■□□□□ 0.2
HPS3Q969F9 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC16.29■□□□□ 0.2
HPS3Q969F9 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC16.29■□□□□ 0.2
HPS3Q969F9 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC16.29■□□□□ 0.2
HPS3Q969F9 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC16.29■□□□□ 0.2
HPS3Q969F9 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC16.29■□□□□ 0.2
HPS3Q969F9 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC16.29■□□□□ 0.2
HPS3Q969F9 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC16.29■□□□□ 0.2
HPS3Q969F9 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
HPS3Q969F9 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HPS3Q969F9 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HPS3Q969F9 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HPS3Q969F9 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC16.28■□□□□ 0.2
HPS3Q969F9 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
HPS3Q969F9 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC16.28■□□□□ 0.2
HPS3Q969F9 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HPS3Q969F9 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HPS3Q969F9 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS3Q969F9 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS3Q969F9 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC16.28■□□□□ 0.2
HPS3Q969F9 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS3Q969F9 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC16.28■□□□□ 0.2
HPS3Q969F9 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS3Q969F9 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC16.28■□□□□ 0.2
HPS3Q969F9 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms