Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 AC093214.1-201ENST00000511688 1107 ntBASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 AC131206.1-201ENST00000538078 1211 ntBASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 AP001063.1-201ENST00000568332 529 ntBASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 AC139530.3-201ENST00000620344 690 ntBASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 RDX-218ENST00000544551 4117 ntTSL 2 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC12.93□□□□□ -0.34
CCDC54Q8NEL0 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 MYADML-201ENST00000474610 2147 ntBASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 TLR6-202ENST00000436693 5880 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 CALY-202ENST00000368555 783 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 HNRNPA1P40-201ENST00000426371 1278 ntBASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 AL162726.2-201ENST00000438986 1017 ntBASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 METTL26-214ENST00000614890 801 ntTSL 3 BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 AC027601.5-201ENST00000624065 2482 ntBASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 ORC5-208ENST00000626700 344 ntTSL 3 BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 AC090114.2-201ENST00000608477 7054 ntBASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 CDH11-201ENST00000268603 6857 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 AC118758.2-201ENST00000614242 2813 ntBASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 AL136172.1-201ENST00000598590 1394 ntBASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC54Q8NEL0 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC12.91□□□□□ -0.34
CCDC54Q8NEL0 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC12.91□□□□□ -0.34
CCDC54Q8NEL0 AL138725.1-201ENST00000407347 1314 ntBASIC12.91□□□□□ -0.34
CCDC54Q8NEL0 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC12.91□□□□□ -0.34
CCDC54Q8NEL0 AL139385.1-201ENST00000611744 3272 ntBASIC12.91□□□□□ -0.34
CCDC54Q8NEL0 CENPP-203ENST00000375587 8766 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC54Q8NEL0 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC54Q8NEL0 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC12.91□□□□□ -0.34
CCDC54Q8NEL0 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC54Q8NEL0 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC54Q8NEL0 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC54Q8NEL0 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC12.91□□□□□ -0.34
CCDC54Q8NEL0 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC12.91□□□□□ -0.34
CCDC54Q8NEL0 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms