Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 GRM4-209ENST00000609222 3176 ntTSL 2 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 MARVELD2-201ENST00000325631 2153 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 TMEM220-201ENST00000341871 3106 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 AC105402.3-202ENST00000446781 2592 ntTSL 5 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 IGHG2-202ENST00000641095 2594 ntAPPRIS P1 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 LINC01164-201ENST00000341866 3384 ntTSL 2 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 AC091948.1-201ENST00000501695 2033 ntTSL 2 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 BAIAP3-215ENST00000568887 3763 ntTSL 2 BASIC9.09□□□□□ -0.96
LINC00643Q86TS7 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 ANP32E-210ENST00000629042 3054 ntTSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 FAM131B-204ENST00000409578 4286 ntTSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 PCNX2-203ENST00000344698 5348 ntAPPRIS ALT2 TSL 2 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 TNKS-213ENST00000522110 2900 ntBASIC9.08□□□□□ -0.96
LINC00643Q86TS7 SLC35B4-201ENST00000378509 6797 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 SLC35B3-201ENST00000379660 2137 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 AGPAT1-204ENST00000395496 2103 ntAPPRIS P1 TSL 3 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 VWC2-201ENST00000340652 11299 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 FGF11-202ENST00000572907 2358 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 GNB5-201ENST00000261837 8906 ntAPPRIS P3 TSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 STAT3-202ENST00000389272 2615 ntTSL 2 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 ARHGAP12-203ENST00000375245 4958 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 AAAS-201ENST00000209873 1840 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 CRHR2-201ENST00000341843 3131 ntTSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 CAMK4-201ENST00000282356 12240 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 PTPN1-201ENST00000371621 4008 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 UBE2W-201ENST00000419880 2315 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 VDR-202ENST00000395324 4762 ntAPPRIS P1 TSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 FMNL1-202ENST00000331495 4101 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 RPS24-204ENST00000440692 2814 ntTSL 3 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 PACRG-AS1-201ENST00000626335 2192 ntTSL 2 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 CTNS-203ENST00000399306 803 ntTSL 3 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 PPP1R14BP2-201ENST00000426284 444 ntBASIC9.08□□□□□ -0.96
LINC00643Q86TS7 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 AP002469.2-201ENST00000531724 424 ntBASIC9.08□□□□□ -0.96
LINC00643Q86TS7 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 MIR4758-201ENST00000577688 71 ntBASIC9.08□□□□□ -0.96
LINC00643Q86TS7 AF186192.3-201ENST00000583427 947 ntBASIC9.08□□□□□ -0.96
LINC00643Q86TS7 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 AL353135.1-201ENST00000606729 504 ntBASIC9.08□□□□□ -0.96
LINC00643Q86TS7 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 LITAF-220ENST00000620789 692 ntTSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 COIL-201ENST00000240316 2650 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 NR1H3-201ENST00000395397 1501 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 FAM161A-203ENST00000405894 3684 ntAPPRIS P3 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 VANGL1-201ENST00000310260 2265 ntAPPRIS P3 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 POLE-207ENST00000535270 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 LOXHD1-210ENST00000536736 6848 ntAPPRIS P5 TSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 PES1-203ENST00000402281 2760 ntTSL 2 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 HJURP-204ENST00000432087 3027 ntAPPRIS ALT2 TSL 2 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 AL645608.3-201ENST00000448179 3043 ntTSL 2 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 SLC6A6-204ENST00000613060 6526 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 PAX5-201ENST00000358127 8615 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 MYT1L-204ENST00000428368 4850 ntAPPRIS P3 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 ABCD1P2-201ENST00000429313 1601 ntBASIC9.08□□□□□ -0.96
LINC00643Q86TS7 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 CTNS-201ENST00000046640 2866 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 KLHL24-211ENST00000476808 2126 ntTSL 2 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 AC104758.3-203ENST00000562938 2123 ntBASIC9.08□□□□□ -0.96
LINC00643Q86TS7 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 RBM8A-204ENST00000583313 4961 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 VWDE-206ENST00000614403 4701 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 KMT2A-201ENST00000389506 13655 ntAPPRIS P3 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 PITRM1-201ENST00000224949 3450 ntAPPRIS ALT2 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 HPD-204ENST00000543163 1709 ntTSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 ZBTB45P1-201ENST00000452761 1456 ntBASIC9.08□□□□□ -0.96
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms