Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC15.03■□□□□ -0
CHD9Q3L8U1 OLA1P2-201ENST00000395519 1264 ntBASIC15.03■□□□□ -0
CHD9Q3L8U1 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC15.03■□□□□ -0
CHD9Q3L8U1 NRADDP-201ENST00000437305 691 ntBASIC15.03■□□□□ -0
CHD9Q3L8U1 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC15.03■□□□□ -0
CHD9Q3L8U1 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC15.03■□□□□ -0
CHD9Q3L8U1 ACY3-202ENST00000529256 933 ntTSL 3 BASIC15.03■□□□□ -0
CHD9Q3L8U1 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC15.03■□□□□ -0
CHD9Q3L8U1 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC15.03■□□□□ -0
CHD9Q3L8U1 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC15.03■□□□□ -0
CHD9Q3L8U1 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC15.03■□□□□ -0
CHD9Q3L8U1 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
CHD9Q3L8U1 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.03■□□□□ -0
CHD9Q3L8U1 AC007952.5-201ENST00000572818 1486 ntBASIC15.03■□□□□ -0
CHD9Q3L8U1 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.03■□□□□ -0
CHD9Q3L8U1 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.03■□□□□ -0
CHD9Q3L8U1 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC15.03■□□□□ -0
CHD9Q3L8U1 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CHD9Q3L8U1 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CHD9Q3L8U1 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC15.03■□□□□ -0
CHD9Q3L8U1 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC15.03■□□□□ -0
CHD9Q3L8U1 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC15.03■□□□□ -0
CHD9Q3L8U1 AL009176.1-201ENST00000607876 650 ntBASIC15.03■□□□□ -0
CHD9Q3L8U1 AC073869.4-201ENST00000620841 800 ntBASIC15.03■□□□□ -0
CHD9Q3L8U1 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
CHD9Q3L8U1 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC15.03■□□□□ -0
CHD9Q3L8U1 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC15.03■□□□□ -0
CHD9Q3L8U1 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CHD9Q3L8U1 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.03■□□□□ -0
CHD9Q3L8U1 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CHD9Q3L8U1 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC15.03■□□□□ -0
CHD9Q3L8U1 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC15.03■□□□□ -0
CHD9Q3L8U1 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC15.03■□□□□ -0
CHD9Q3L8U1 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC15.03■□□□□ -0
CHD9Q3L8U1 GH1-203ENST00000351388 685 ntTSL 2 BASIC15.03■□□□□ -0
CHD9Q3L8U1 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC15.03■□□□□ -0
CHD9Q3L8U1 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC15.03■□□□□ -0
CHD9Q3L8U1 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC15.03■□□□□ -0
CHD9Q3L8U1 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC15.03■□□□□ -0
CHD9Q3L8U1 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC15.03■□□□□ -0
CHD9Q3L8U1 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.02■□□□□ -0
CHD9Q3L8U1 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CHD9Q3L8U1 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.02■□□□□ -0
CHD9Q3L8U1 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
CHD9Q3L8U1 AC138035.3-201ENST00000622706 2791 ntBASIC15.02■□□□□ -0
CHD9Q3L8U1 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CHD9Q3L8U1 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.02■□□□□ -0
CHD9Q3L8U1 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.02■□□□□ -0
CHD9Q3L8U1 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.02■□□□□ -0
CHD9Q3L8U1 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.02■□□□□ -0
CHD9Q3L8U1 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
CHD9Q3L8U1 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC15.02■□□□□ -0
CHD9Q3L8U1 EEF1DP2-201ENST00000433698 843 ntBASIC15.02■□□□□ -0
CHD9Q3L8U1 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC15.02■□□□□ -0
CHD9Q3L8U1 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC15.02■□□□□ -0
CHD9Q3L8U1 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC15.02■□□□□ -0
CHD9Q3L8U1 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC15.02■□□□□ -0
CHD9Q3L8U1 AC011431.1-201ENST00000512971 230 ntBASIC15.02■□□□□ -0
CHD9Q3L8U1 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC15.02■□□□□ -0
CHD9Q3L8U1 AC087072.1-201ENST00000603727 421 ntBASIC15.02■□□□□ -0
CHD9Q3L8U1 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC15.02■□□□□ -0
CHD9Q3L8U1 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
CHD9Q3L8U1 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
CHD9Q3L8U1 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.02□□□□□ -0.01
CHD9Q3L8U1 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.02□□□□□ -0.01
CHD9Q3L8U1 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.02□□□□□ -0.01
CHD9Q3L8U1 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CHD9Q3L8U1 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CHD9Q3L8U1 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CHD9Q3L8U1 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC15.02□□□□□ -0.01
CHD9Q3L8U1 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC15.02□□□□□ -0.01
CHD9Q3L8U1 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC15.02□□□□□ -0.01
CHD9Q3L8U1 AC093300.1-201ENST00000510368 1201 ntBASIC15.02□□□□□ -0.01
CHD9Q3L8U1 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC15.02□□□□□ -0.01
CHD9Q3L8U1 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC15.02□□□□□ -0.01
CHD9Q3L8U1 AC254633.1-201ENST00000606790 345 ntBASIC15.02□□□□□ -0.01
CHD9Q3L8U1 AC104506.1-201ENST00000609247 429 ntBASIC15.02□□□□□ -0.01
CHD9Q3L8U1 MIR6893-201ENST00000613458 69 ntBASIC15.02□□□□□ -0.01
CHD9Q3L8U1 AC138627.1-201ENST00000641127 1257 ntBASIC15.02□□□□□ -0.01
CHD9Q3L8U1 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CHD9Q3L8U1 AC015909.5-201ENST00000624336 2266 ntBASIC15.01□□□□□ -0.01
CHD9Q3L8U1 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.01□□□□□ -0.01
CHD9Q3L8U1 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHD9Q3L8U1 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CHD9Q3L8U1 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHD9Q3L8U1 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
CHD9Q3L8U1 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
CHD9Q3L8U1 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC15.01□□□□□ -0.01
CHD9Q3L8U1 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC15.01□□□□□ -0.01
CHD9Q3L8U1 RNU1-80P-201ENST00000459500 161 ntBASIC15.01□□□□□ -0.01
CHD9Q3L8U1 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC15.01□□□□□ -0.01
CHD9Q3L8U1 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC15.01□□□□□ -0.01
CHD9Q3L8U1 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC15.01□□□□□ -0.01
CHD9Q3L8U1 AL021707.6-201ENST00000609212 491 ntBASIC15.01□□□□□ -0.01
CHD9Q3L8U1 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC15.01□□□□□ -0.01
CHD9Q3L8U1 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC15.01□□□□□ -0.01
CHD9Q3L8U1 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC15.01□□□□□ -0.01
CHD9Q3L8U1 PKD1P6-201ENST00000343738 4769 ntBASIC15.01□□□□□ -0.01
CHD9Q3L8U1 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHD9Q3L8U1 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms